[mira_talk] Re: RE Re: Mixed case Roche 454 data and -CL:lowercase_clip
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Mon, 23 Nov 2009 21:43:07 +0100
On Montag 23 November 2009 Peter wrote:
> > try again puting -GE:nop=1 between -job=denovo,genome,accurate,454 and
> > 454_SETTINGS
> > e.g.
> > mira -job=denovo,genome,accurate,454 -GE:nop=1 454_SETTINGS
> > -CL:lowercase_clip -fastq=phage.fastq -LR:mxti=no > mira.log
>
> Same error, but thanks for the suggestion.
-GE:nop does not exist. There's -AS:nop for number of passes or -GE:not for
number of threads :-)
Regards,
Bastien
PS: Jorges comment is still valid: both -AS:nop and -GE:not must appear in a
common settings section, not in a <TECHNOLOGY>_setting.
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