Hi,
I have looked at the SNP output of MIRA- as an excel file (for biologists)
and found this field "Quality mutant" for which all the values are 10. The
Quality reference field has 30, which seems like a default.
Am I right in thinking that the MIRA assembly quality scores for each base
is an average quality score of that base from all the reads?
I would be grateful if you could please explain why this value (10) was the
same for all the SNPs
Sorry if this is a dumb question, but really appreciate it if you could
clarify.
Many Thanks,
Chitra
