On Thu, Sep 16, 2010 at 8:12 PM, Bastien Chevreux <bach@xxxxxxxxxxxx> wrote: > > On Donnerstag 16 September 2010 Daniel Depledge wrote: >> I would also like to find out about how to convert the Mira output into a >> SAM. > > I currently know none, sorry. SAM is on my TODO, but pretty low at the moment. > > B. I managed to hack together a MAF to SAM script in Python, but there was one thing which would needed work: representation of any paired reads in the MAF file. I had fallen back on looking at the read names (but of course MIRA supports multiple different naming conventions). I think I should be using the DI and TN information here... Peter -- You have received this mail because you are subscribed to the mira_talk mailing list. For information on how to subscribe or unsubscribe, please visit http://www.chevreux.org/mira_mailinglists.html