[mira_talk] Re: Paired end info - SAM/BAM output from MIRA?

  • From: Bastien Chevreux <bach@xxxxxxxxxxxx>
  • To: mira_talk@xxxxxxxxxxxxx
  • Date: Sun, 3 Oct 2010 15:31:39 +0200

On Sonntag 03 Oktober 2010 Raj Kumar, Praveen Kumar Mr. wrote:
> Thank you. MAF file is located in the chkpoint folder.

Wrong MAF file, that one just contains read data.

Take the one from the results folder.

If not present (for whatever reason), convert a CAF (the one from the re4sult 
folder) to MAF:

  convert_project -f caf -t maf mira_output.maf mira_output


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