[mira_talk] Re: On getting 454 data
- From: Einar Arnason <einararn@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Fri, 4 Sep 2009 12:11:25 +0000
Hi Bastien,
It's been a while but I'd like to get the bceti test SFF files from you. I
haven't been able to get them in other ways.
I'd appreciate if you could sftp to assa.lif.hi.is:
user gestur
passwd: AxVv9dr
Thanks a lot
Einar
2009/7/25 Bastien Chevreux <bach@xxxxxxxxxxxx>
> On Freitag 17 Juli 2009 Einar Arnason wrote:
> > I wanted to share with the list the reply I got from the NCBI helpdesk
> > regarding getting sff files for the mira 454 walk-through. They want to
> > make datasets available for such walk-throughs.
>
> Thanks a lot Einar. Let's see what they can come up with.
>
> In the mean time, I have searched my hard disk and found both SFFs. If you
> want I could upload them to an FTP site of yours.
>
> In other news: the FASTQ files provided by the NCBI for paired-end 454 data
> are
> currently unusable. They're riddled with tons of adaptors which let's about
> every assembler go berserk *sigh* Perhaps I should ask them to use
> 'sff_extract' ... :-)
>
> Regards,
> Bastien
>
>
>
> --
> You have received this mail because you are subscribed to the mira_talk
> mailing list. For information on how to subscribe or unsubscribe, please
> visit http://www.chevreux.org/mira_mailinglists.html
>
--
-----------------------------------------------------
Einar Arnason, Professor einararn@xxxxx
Institute of Biology
University of Iceland
Askja # 346 office 354-525-4613
Sturlugata 7 lab 354-525-4606
101 Reykjavik fax 354-525-4069
Iceland
-----------------------------------------------------
Other related posts:
