[mira_talk] Re: New Solexa seqence identifier format - Paired end reads
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Mon, 16 Apr 2012 00:28:15 +0200
On Apr 14, 2012, at 23:33 , Alexis Blanchet-Cohen wrote:
> Will MIRA understand the new format?
The 3.4 series does not. If you are feeling adventurous, give the 3.9.0
development version a try: this one does.
> Do I have to convert the new format to the old format for MIRA to distinguish
> the paired end reads?
Yes.
> If so, what is the sed command to do this?
I wrote earlier "this is left as an exercise to the reader." Oh well :-)
Try
sed 's/^@\(.+\) \(.\)/@\1\/\2 \2/' infile >outfile
Should work.
B.
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