[mira_talk] Re: New Solexa file format not supported by mira?
- From: Peter Cock <p.j.a.cock@xxxxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Sat, 13 Aug 2011 19:40:38 +0100
On Sat, Aug 13, 2011 at 2:59 PM, Nicolas Balcazar
<balcazar@xxxxxxxxxxxxx> wrote:
> Hi,
>
> I encounter the problem that mira doesnt seem to recognize my solexa reads
> as paired end. (denovo assembly)
> ...
> here the read pairs are denoted by the "1" and "2" before ":N:0:GCCAAT"
> I know that the previous version was with "/1" and "/2". Can this be the
> problem?
Yes, that probably is the problem.
> Do i have to change all @headers now??
Yes, unless Bastien has already updated the latest version of MIRA
to cope with the new Illumina 1.8 files.
Peter
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