[mira_talk] Re: Mira3 server
- From: Juan Daniel Montenegro Cabrera <jdmontenegroc@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Tue, 24 May 2011 11:26:22 -0500
that is the problem, the server and my laptop have both 4GB of memory and
the estimated is 3.9 GB for de novo and 3.1GB for mapping and still both
crash.
For some reason the log file is empty but the program loaded the sequences,
qualities and trace info with no problems and started the assembly normally.
2011/5/24 Davide Sassera <davide.sassera@xxxxxxxx>
> With an assembly like that I think you could just do it on a good desktop
> computer with ubuntu installed.
>
> I'm not sure about latest mira version, but I suppose 4GB of ram would do
> the trick.
>
> Am I too optimistic?
>
> Davide
>
>
>
>
> Dear all,
>> I recently tried to assemble a 454 sequencing project. I have ~190 000
>> reads of 236 bp average length. Although is not a highly demanding
>> assembly, the server i am using crashes all the time. It is pretty old and
>> has a lot of users. Do you know of any other free server i could use to run
>> the assembly?
>> Still I will try to reduce the number of reads since i believe it is
>> over-covered.
>> Any ideas, i would appreciate all the help possible.
>>
>> Juan Montenegro
>>
>
>
> --
> Davide Sassera
> Sezione di Patologia Generale e Parassitologia
> Dipartimento di Patologia Animale, Igiene e Sanità Pubblica Veterinaria
> Facoltà di Veterinaria
> Università degli Studi di Milano
> Via Celoria 10, 20133, Milano, ITALY
> Tel: +39 0250318094
> Fax: +39 0250318095
>
>
> --
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