[mira_talk] Re: Mira and NFS mount
- From: Iddo Friedberg <idoerg@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Tue, 9 Aug 2011 17:57:55 -0400
Evan & Roble, thanks to both of you. I failed to read the warning at the end
of the log file.
Best,
Iddo
On Tue, Aug 9, 2011 at 5:48 PM, Evan <evan@xxxxxxxxxxx> wrote:
> There is no limit to the readname length in Mira. Mira just likes to inform
> you that it *could* be a problem for other tools down the road. This
> warning can be disabled if you add the switch -MI:somrnl=0 in your
> COMMON_SETTINGS
>
>
> ~Evan
>
>
> On Tue, Aug 9, 2011 at 2:12 PM, Iddo Friedberg <idoerg@xxxxxxxxx> wrote:
>
>> Thanks.
>>
>> Now it seems that another problem came up:
>>
>> Name too long: HWUSI-EAS687_112864999:8:3:9753:12271#CCGTCC/2
>>
>> What is the character limit on read names?
>>
>> Thanks,
>>
>> ./I
>>
>>
>> On Tue, Aug 9, 2011 at 4:35 PM, Bastien Chevreux <bach@xxxxxxxxxxxx>wrote:
>>
>>> **
>>>
>>> On Tuesday 09 August 2011 21:38:12 Iddo Friedberg wrote:
>>>
>>> > Thanks Bastien.
>>>
>>> >
>>>
>>> > Anyhow, it seems like I may have found a cluster with some local
>>> diskspace,
>>>
>>> > so I can redirect the log directory locally. Also installed 3.4rc4. The
>>>
>>> > only trouble is, that now I an getting the following:
>>>
>>> >
>>>
>>> > mira --project=CCGTCC COMMON_SETTINGS
>>>
>>> > -DI:lrt=/localscratch/friedbi/mira_logs
>>> --job=denovo,genome,accurate,solexa
>>>
>>> > SOLEXA_SETTINGS -GE:tismin=300:tismax=500 >& log_assembly.txt
>>>
>>>
>>>
>>> -DI:lrt got renamed to -DI:trt.
>>>
>>>
>>> One of the few incompatibilities in command line parsing I had to
>>> introduce lately, sorry for that.
>>>
>>>
>>> B.
>>>
>>>
>>>
>>
>>
>> --
>> Iddo Friedberg
>> http://iddo-friedberg.net/contact.html
>>
>
>
--
Iddo Friedberg
http://iddo-friedberg.net/contact.html
Other related posts:
