[mira_talk] Re: Mira Bug report
- From: Jackie Lighten <jc807177@xxxxxx>
- To: <mira_talk@xxxxxxxxxxxxx>
- Date: Thu, 08 Mar 2012 13:18:16 -0400
Command;
miraSearchESTSNPs --project=WS --job=denovo,accurate,454,esps1 -notraceinfo
454_SETTINGS
-noclipping -cl:cpat=1 -co:asir=1:mnq=20:mrpg=2
>&log_assemblyWS.txt
I have two separate projects using the same parameters running on different
terminals. However when I start the first assembly, a "WS" project folder is
not created. Instead a "step1_assembly" folder.
When I start the second assembly, no new folder appears.
When I dig around in the "Step 1" folder I see information which seems to
originate from both separate assemblies. Could this be causing the issue?
Thanks,
J
On 12-03-08 1:08 PM, "Peter Cock" <p.j.a.cock@xxxxxxxxxxxxxx> wrote:
> On Thu, Mar 8, 2012 at 5:02 PM, Jackie Lighten <jc807177@xxxxxx> wrote:
>> ...
>> Thank you for noticing that this is *NOT* a crash, but a
>> controlled program stop.
>> jackie@ubuntu:~/Desktop/Mira$ 454_SETTINGS
>> 454_SETTINGS: command not found
>> jackie@ubuntu:~/Desktop/Mira$ -noclipping -cl:cpat=1
>> -co:asir=1:mnq=20:mrpg=2
>> -noclipping: command not found
>>
>
> What did you type in as the command to run MIRA?
>
> From the end of the text you copied and pasted, I guess you gave MIRA a
> partial command accidentally by copy and pasting an example with line breaks.
> i.e. these two lines should have been included:
>
> 454_SETTINGS
> -noclipping -cl:cpat=1
>
> Peter
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