[mira_talk] Re: Mappging to Reference
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Fri, 23 Jul 2010 22:01:58 +0200
On Freitag 23 Juli 2010 Saulo Alves wrote:
> Here follows,
> Thank you very much
Hmmm. That screenshot looks OK to me. I see no rail read which is not covered
by any normal Solexa read.
Generally speaking, areas of a reference genome (or rail reads) not covered by
resequenced reads mean that you most probably have a deletion in your
sequenced genome. If your sequencing sample was a mixed population (with and
without deletion), then you may notice a sharp drop in coverage.
But then again ... I wonder why you see rail read. Did you take an
intermediate result from the log directory?
Regards,
Bastien
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