[mira_talk] Re: MIRA3r4 and memory on Mac OS X
- From: Tony Travis <a.travis@xxxxxxxxxx>
- To: "mira_talk@xxxxxxxxxxxxx" <mira_talk@xxxxxxxxxxxxx>
- Date: Fri, 27 Nov 2009 21:14:59 +0000
Bastien Chevreux wrote:
On Donnerstag 26 November 2009 Tony Travis wrote:
Thanks for reminding me: I took it down because some fraudster used info
taken from my (far too detailed) CV to make bogus funding applications!
You live and learn about what not to put on the internet ;-)
Wait ... what? One could make a funding application just by reading your CV?
What did you put in there? (so that I don't make the same mistake)
Hello, Bastien.
To you and anyone else unwary enough to put their CV online, I received
a number of helpful and sympathetic emails from various people at US
Universities asking me if I realised that someone had lifted my CV more
or less verbatim and used it to approach them with a fraudulent attempt
to get funding. To cut a long story short, I informed the police, and my
employer, that I had been a victim of identity theft. There was nothing
particularly sensitive in my CV, but it was enough for someone to try.
Needless to say, I'm a bit cautious about what I put up to replace it!
Anyway, enough of this off-topic chit-chat ;-)
I've noticed that the -FI/FILE switch is now deprecated in favour of
-FN/FILENAME, but the online MIRA manual still describes -FI/FILE. This
caused me a certain amount of head-scratching recently, while attempting
to override the default filenames so I can use the same info and strain
files for a denovo and mapping assembly:
denovo: $(READ) $(QUAL) $(INFO) $(STRAIN)
mira -project=$(PROJECT) \
-fasta \
-job=denovo,genome,normal,sanger,454 \
-highlyrepetitive \
-SB:lsd=on \
SANGER_SETTINGS -LR:rns=fr,mxti=on
mapping: $(MREAD) $(MQUAL) $(INFO) $(STRAIN)
mira -project=$(MPROJECT) \
-fasta \
-job=mapping,genome,sanger \
-highlyrepetitive \
-SB:lsd=on,lb=on \
SANGER_SETTINGS -LR:rns=fr,mxti=on
-FN:xtii=$(PROJECT)_traceinfo_in.sanger.xml \
COMMON_SETTINGS -FN:sdi=$(PROJECT)_straindata_in.txt
Bye,
Tony.
--
Dr. A.J.Travis, University of Aberdeen, Rowett Institute of Nutrition
and Health, Greenburn Road, Bucksburn, Aberdeen AB21 9SB, Scotland, UK
tel +44(0)1224 712751, fax +44(0)1224 716687, http://www.rowett.ac.uk
mailto:a.travis@xxxxxxxxxx, http://bioinformatics.rri.sari.ac.uk/~ajt
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