Hi Bastein et al, Have you seen this thread on seqanswers? http://seqanswers.com/forums/showthread.php?t=8895 Illumina are planning to switch to Sanger FASTQ encodings (hooray), and also detail their planned read naming conventions (which I think you should be aware of for paired end reads). Regards, Peter -- You have received this mail because you are subscribed to the mira_talk mailing list. For information on how to subscribe or unsubscribe, please visit http://www.chevreux.org/mira_mailinglists.html