[mira_talk] Re: General installation question - MIRA utilities
- From: Roderick Felsheim <felsh001@xxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Wed, 29 May 2013 10:42:26 -0500
Hi Aaron,
It took me awhile to figure that one out. Download the precompiled version of
mira to look into the bin folder not necessarily to use it. You'll notice that
mirabait is just an alias to convert_project. Copy and paste it into your bin
folder or make your own and it should work as advertized. It even works on a
Mac.
Rod
On May 29, 2013, at 9:48 AM, Aaron Aunins wrote:
> Hello - I have a basic question about installation of MIRA 3.4.1.1 and it's
> utilities as described in Chapter 11 of the definitive guide to MIRA.
>
> The machine I am installing MIRA 3.4.1.1 on is running Linux Redhat 6.1. I am
> new to Linux and installing software from source, but I managed to install
> all of the dependencies required for installation of MIRA. The following is
> what finally worked for running ./configure to install MIRA:
>
> ./configure CPPFLAGS="-I/media/biotools/boost_1_53_0 -I/usr/local/lib64"
> LDFLAGS="-I/media/data/biotools/boost_1_53_0/stage/lib -I/usr/local/lib64"
> --with-boost-libdir=/usr/local/lib
>
> It is entirely possible some of that may not be necessary, but this is the
> only way I could run make and make install with no errors. Anyway, MIRA
> appears to run fine. However, I cannot run mirabait. In the INSTALL file
> section 3, running ./configure should install mira, convert_project,
> fastatool, scftool, and uncover_at. All of these utilities are functional,
> but I get no usage/manual file for mirabait. My machine says 'command not
> found' when I type mirabait at the command line. When I try to use mirabait
> as described elsewhere in the mailing list archives, mappings and project
> conversions all work, but mirabait does not.
>
> Could someone please point me in the right direction of what I may have done
> wrong with my installation that I do not have a functioning mirabait utility?
> I want to have this installed so I can try out the new MITObim script (Hahn
> et al. 2013).
>
> Thanks for your time,
>
> Aaron Aunins
>
> --
> Ecological Genetics Laboratory
> Virginia Commonwealth University
> Life Sciences Building, Rm 327
> 1000 West Cary St
> Richmond, VA 23284-2012
> Office Phone: 804-828-0906
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