On Mittwoch 30 September 2009 Miguel Pinheiro wrote: > [...] > For example: the read F2F5W1J01DTYAP belongs to the strain "xpto" and in > the first step it appears in the "step1_out.caf". > In the second step it appears in the "remain" and doesn't appear in the > "xpto_out.caf" file. Why??? Hello Miguel, I suppose it has been sorted out as singlet in step 2. This can happen, though I'd need to search for the exact circumstances. > Another possible enhancement that could be done is the ability to analyze > more than 8 strains at a time. In my case I have 7 strains and the "remain" > strain. So, with this pipeline it is not possible to use more than 8 > strains simultaneously. I don't remember exactly why I capped the number of strain in MIRA to 8 ... I think some data structure had only 3 bits remaining and could not imagine that people would like to assemble more than 4 or 5 strains. I've put that suggestion onto the feature request list, but it will not appear anytime soon I'm afraid. > Where do I get a table with the description of TAGs that appear in the caf > files?? Does the section "Tags used in the assembly by MIRA and EdIt" of the main manual answer your question? :-) Regards, Bastien -- You have received this mail because you are subscribed to the mira_talk mailing list. For information on how to subscribe or unsubscribe, please visit http://www.chevreux.org/mira_mailinglists.html