[mira_talk] Re: Backbone assembly
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Fri, 15 Apr 2011 23:59:04 +0200
On Friday 15 April 2011 15:18:45 Andrei Tudor wrote:
> So there is no need to use a program like ABACAS to build a pseudomolecule?
> Also after the checking through gap5 and if there is no need for a
> pseudomolecule, can i submit it for annotation?
Ahm ... what you got probably was a pure mapping assembly. If I were you, I
would take all the reads from the debris file of that assembly and assemble
these de-novo to hunt for genpome stretches which were not prsent in your
reference genome.
B.
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