[mira_talk] Re: BAC vector sequece masking for de novo assembly using PacBio C2
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Sat, 25 May 2013 14:39:45 +0200
On May 25, 2013, at 14:35 , Peter Cock <p.j.a.cock@xxxxxxxxxxxxxx> wrote:
> Would it make sense to think of these two fragments on either side of the
> vector as paired reads? Much like Roche 545 where the sequence is
> circularised with an adapter - one might even be able to repurpose existing
> code for handling that (eg sff_extract pair extract logic).
Oh, neat idea. Indeed, exploring sff_extract might be a good idea, though I
cannot predict how good it would really be.
B.
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