Le 30/01/2012 23:54, Evan Hart a écrit :
Can you provide an example output of what kind of details this program provides?
the same output provided by Mira into contigstats file:# name length av.qual #-reads mx.cov. av.cov GC% CnIUPAC CnFunny CnN CnX CnGap CnNoCov Contig_name_90_1 1246 81 2752 1254 610.57 48.48 0 0 0 0 86 0 Contig_name_90_2 1794 84 3136 756 431.78 37.35 0 0 0 0 93 0 Contig_name_90_3 1554 83 7886 1741 639.38 35.07 0 0 0 0 149 0 Contig_name_90_4 666 80 2784 2253 878.06 34.68 0 0 0 0 69 0
.../... Laurent --
Thanks, EvanOn Thu, Jan 26, 2012 at 5:15 AM, Laurent MANCHON <lmanchon@xxxxxxxxxxxxxx <mailto:lmanchon@xxxxxxxxxxxxxx>> wrote:--hello, I don't know if this could be useful, but I just finished a program that generates statistics directly from ACE files. It is faster or slower depending on the number of sequences per contig encountered. It works well as is but I think it can be optimized, it will depend on feedback and demand. It is to be tested on differents platforms. For now I have compiled a 64bit version available here:http://www.vital-it.ch/prd/lmanchon/ace2stats.bin There are small differences in results with those generated by mira, but it is insignificant (i think). thank you, Laurent ---- You have received this mail because you are subscribed to themira_talk mailing list. For information on how to subscribe or unsubscribe, please visit http://www.chevreux.org/mira_mailinglists.html