[mira_talk] Re: 5' trimming of partial adapters

  • From: Bastien Chevreux <bach@xxxxxxxxxxxx>
  • To: mira_talk@xxxxxxxxxxxxx
  • Date: Wed, 20 Jul 2011 22:50:18 +0200

On Wednesday 20 July 2011 22:28:21 Robert E Bruccoleri wrote:
> Dear Bastien,
>       Just to confirm, the reads used in the assembly are in the
> file, readpool.maf. I presume I should remove everything that was
> clipped (as indicated by the QL and QR fields). Correct?

Or the other clipping fields. But do not bother writing something yourself :-)

  convert_project -f maf -t fastq -C readpool.maf newdata

B.

Other related posts: