You have another problem in the xyz.in input file:
This NEP potential for PbTe has a radial cutoff distance of 8 A, and you
set the initial neighbor list cutoff to 5 A only. This will
definitely cause problems. You can set the initial neighbor list cutoff to
9 A, and (optionally) use the following command within each "run" in the
run.in input file:
neighbor 1.0 # enable neighbor list updating with a skin distance of 1 A
By default, GPUMD does not update the neighbor list at all.
Suggestion: It is very important to read through the whole manual before
using GPUMD. Fortunately, this will only take a couple of days.
Zheyong
On Sun, Aug 8, 2021 at 12:23 AM Bruce Fan <brucenju@xxxxxxxxx> wrote:
For the NEP potential, use atomic number as the type in the first column
of xyz.in.
I will add this to manual soon.
Zheyong
Yuan, Liang <Liang.Yuan@xxxxxxxxxxxxxxx> 于 2021年8月7日周六 18:51写道：
Hi Zheyong,
Thank you so much for your time.
I found that there are no examples of testing the NEP.
Therefore I prepared the two files (xyz.in and run.in) for PbTe with nep
potential in /GPUMD/potentials/nep/PbTe_Fan_2021.txt.
But there is an error "Failed to open examples/gpumd/a_pbte_gpumd_test/
atomic_number.in!"
It seems that there should be a file named "atomic_number.in" when run
the MD with NEP.
I attached the xyz.in and run.in alongside this email, and full
information of the error is:
(base) liang@GPUWORKSTATION:~/code/GPUMD$ gpumd <
examples/input_gpumd.txt
***************************************************************
* Welcome to use GPUMD *
* (Graphics Processing Units Molecular Dynamics) *
* Version 2.5.1 *
* This is the gpumd executable *
* Authors: *
* Zheyong Fan <brucenju@xxxxxxxxx> *
* Alexander J. Gabourie <gabourie@xxxxxxxxxxxx> *
* Ville Vierimaa *
* Mikko Ervasti *
* Ari Harju *
***************************************************************
---------------------------------------------------------------
Compiling options:
---------------------------------------------------------------
DEBUG is off: Use different PRNG seeds for different runs.
---------------------------------------------------------------
GPU information:
---------------------------------------------------------------
Device id: 0
Device name: NVIDIA TITAN Xp
Compute capability: 6.1
Amount of global memory: 11.9079 GB
Amount of constant memory: 64 KB
Maximum grid size: 2147483647 65535 65535
Maximum block size: 1024 1024 64
Number of SMs: 30
Maximum amount of shared memory per block: 48 KB
Maximum amount of shared memory per SM: 96 KB
Maximum number of registers per block: 64 K
Maximum number of registers per SM: 64 K
Maximum number of threads per block: 1024
Maximum number of threads per SM: 2048
---------------------------------------------------------------
Run simulation for 'examples/gpumd/a_pbte_gpumd_test'.
---------------------------------------------------------------
---------------------------------------------------------------
Started initializing positions and related parameters.
---------------------------------------------------------------
Number of atoms is 512.
Maximum number of neighbors is 1024.
Initial cutoff for neighbor list is 5 A.
Use orthogonal box.
Do not specify initial velocities here.
Have no grouping method.
Box lengths are
Lx = 2.5816400528e+01 A
Ly = 2.5816400528e+01 A
Lz = 2.5816400528e+01 A
Use periodic boundary conditions along x.
Use periodic boundary conditions along y.
Use periodic boundary conditions along z.
There are 2 atom types.
256 atoms of type 0.
256 atoms of type 1.
---------------------------------------------------------------
Finished initializing positions and related parameters.
---------------------------------------------------------------
---------------------------------------------------------------
Started executing the commands in run.in.
---------------------------------------------------------------
Use the NEP potential.
radial cutoff = 8 A.
angular cutoff = 4 A.
n_max_radial = 12.
n_max_angular = 6.
l_max = 4.
ANN = 41-40-1.
Failed to open examples/gpumd/a_pbte_gpumd_test/atomic_number.in!
No such file or directory
--------------
Liang Yuan
Bayerisches Geoinstitut
Universitätsstraße 30, 95447 Bayreuth, Germany
https://www.bgi.uni-bayreuth.de/?page=4&lng=en&mode=s&id=342
------------------------------
*From:* gpumd-bounce@xxxxxxxxxxxxx <gpumd-bounce@xxxxxxxxxxxxx> on
behalf of Bruce Fan <brucenju@xxxxxxxxx>
*Sent:* 06 August 2021 22:39:14
*To:* gpumd@xxxxxxxxxxxxx
*Subject:* [gpumd] Re: Compiling errors for the GPUMD code with NEP
updates
To prepare for the train.in file, you need to read the document (
https://gpumd.zheyongfan.org/index.php/The_train.in_input_file) and
write some code to generate it by yourself. This reflects the philosophy of
GPUMD: we assume that the user is a good programmer :-)
Zheyong
On Sat, Aug 7, 2021 at 4:21 AM Yuan, Liang <Liang.Yuan@xxxxxxxxxxxxxxx>
wrote:
Dear Zheyong,
Thank you so much for your help.
Yes, the error is related to my GCC as I successfully installed the code
on another workstation with a newer ubuntu system.
Now I can run "src/nep < examples/input_nep.txt". I expect that the input
training data for silicon is stored in the file "train.in"(?)
May I ask, to produce it from VASP output, do I have some script?
With best regards,
Liang
--------------
Liang Yuan
Bayerisches Geoinstitut
Universitätsstraße 30, 95447 Bayreuth, Germany
https://www.bgi.uni-bayreuth.de/?page=4&lng=en&mode=s&id=342
------------------------------
*From:* gpumd-bounce@xxxxxxxxxxxxx <gpumd-bounce@xxxxxxxxxxxxx> on
behalf of Bruce Fan <brucenju@xxxxxxxxx>
*Sent:* 06 August 2021 21:49
*To:* gpumd@xxxxxxxxxxxxx
*Subject:* [gpumd] Re: Compiling errors for the GPUMD code with NEP
updates
Another hint: perhaps you can also try to change the GCC optimization
level in the makefile (within the src/ folder):
CFLAGS = -std=c++11 *-O3* -arch=sm_35
to
CFLAGS = -std=c++11 *-O2* -arch=sm_35
Zheyong
On Sat, Aug 7, 2021 at 3:43 AM Bruce Fan <brucenju@xxxxxxxxx> wrote:
Hi Liang,
Thanks for reporting this issue. I believe it is due to the GCC
version. I have found similar questions from the github repo of tensorflow.
You can read it and try to find some clue for the solution (might be just
changing to use an older GCC):
https://github.com/tensorflow/tensorflow/issues/10220
You can also try to build GPUMD in other machines with CUDA to see if
it has the same problem.
Anyway, welcome to post further questions if you cannot solve them.
Zheyong
On Sat, Aug 7, 2021 at 3:25 AM Yuan, Liang <Liang.Yuan@xxxxxxxxxxxxxxx>
wrote:
Hello Zheyong,
I read your paper (arXiv:2107.08119 <https://arxiv.org/abs/2107.08119>
) with exceptional interest, which integrates neural
network potential with molecular dynamics within the GPUMD code.
It is an exciting update that comes out after a long wait.
There is just one little question which I will likely need your
suggestions. I found errors when compiling the code, and I attached them
at
the end of this email. May I ask if you can help to figure what is
going wrong?
Another related question about the neural network potential is how
to prepare the training dataset from VASP output?
Thank you very much for your help.
With best regards,
Liang
--------------
Liang Yuan
Bayerisches Geoinstitut
Universitätsstraße 30, 95447 Bayreuth, Germany
https://www.bgi.uni-bayreuth.de/?page=4&lng=en&mode=s&id=342
My Linux workstation information:
gcc --version:
gcc (Ubuntu 7.5.0-3ubuntu1~18.04) 7.5.0
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There
is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE.
nvcc --version:
nvcc: NVIDIA (R) Cuda compiler driver
Copyright (c) 2005-2017 NVIDIA Corporation
Built on Fri_Nov__3_21:07:56_CDT_2017
Cuda compilation tools, release 9.1, V9.1.85
The full information of the errors are:
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c main_gpumd/main.cu -o
main_gpumd/main.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c main_gpumd/velocity.cu -o
main_gpumd/velocity.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c main_gpumd/run.cu -o
main_gpumd/run.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c minimize/minimizer_sd.cu -o
minimize/minimizer_sd.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c minimize/minimizer.cu -o
minimize/minimizer.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c minimize/minimize.cu -o
minimize/minimize.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c integrate/ensemble.cu -o
integrate/ensemble.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c integrate/integrate.cu -o
integrate/integrate.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c integrate/ensemble_lan.cu -o
integrate/ensemble_lan.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c integrate/ensemble_nve.cu -o
integrate/ensemble_nve.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c integrate/ensemble_ber.cu -o
integrate/ensemble_ber.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c integrate/ensemble_bdp.cu -o
integrate/ensemble_bdp.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c integrate/ensemble_nhc.cu -o
integrate/ensemble_nhc.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c force/tersoff1989.cu -o
force/tersoff1989.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c force/force.cu -o
force/force.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c force/nep.cu -o force/nep.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c force/vashishta.cu -o
force/vashishta.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c force/potential.cu -o
force/potential.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c force/fcp.cu -o force/fcp.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c force/force_constant.cu -o
force/force_constant.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c force/sw.cu -o force/sw.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c force/lj.cu -o force/lj.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c force/tersoff1988.cu -o
force/tersoff1988.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c force/tersoff_mini.cu -o
force/tersoff_mini.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c force/rebo_mos2.cu -o
force/rebo_mos2.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c force/validate.cu -o
force/validate.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c force/ri.cu -o force/ri.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c force/limt.cu -o force/limt.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c force/eam.cu -o force/eam.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c measure/cvac.cu -o
measure/cvac.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c measure/compute_heat.cu -o
measure/compute_heat.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c measure/hnemd_kappa.cu -o
measure/hnemd_kappa.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c measure/parse_utilities.cu
-o measure/parse_utilities.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c measure/dump_restart.cu -o
measure/dump_restart.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c measure/dos.cu -o
measure/dos.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c measure/dump_velocity.cu -o
measure/dump_velocity.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c measure/dump_thermo.cu -o
measure/dump_thermo.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c measure/measure.cu -o
measure/measure.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c measure/modal_analysis.cu -o
measure/modal_analysis.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c measure/shc_harmonic.cu -o
measure/shc_harmonic.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c measure/hac.cu -o
measure/hac.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c measure/dump_force.cu -o
measure/dump_force.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c measure/dump_position.cu -o
measure/dump_position.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c measure/sdc.cu -o
measure/sdc.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c measure/dump_netcdf.cu -o
measure/dump_netcdf.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c measure/shc.cu -o
measure/shc.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c measure/compute.cu -o
measure/compute.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c model/neighbor_ON1.cu -o
model/neighbor_ON1.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c model/neighbor.cu -o
model/neighbor.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c model/read_xyz.cu -o
model/read_xyz.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c model/box.cu -o model/box.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c model/group.cu -o
model/group.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c model/neighbor_ON2.cu -o
model/neighbor_ON2.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c utilities/cusolver_wrapper.cu
-o utilities/cusolver_wrapper.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c utilities/error.cu -o
utilities/error.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c utilities/read_file.cu -o
utilities/read_file.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c utilities/main_common.cu -o
utilities/main_common.o
nvcc main_gpumd/main.o main_gpumd/velocity.o main_gpumd/run.o
minimize/minimizer_sd.o minimize/minimizer.o minimize/minimize.o
integrate/ensemble.o integrate/integrate.o integrate/ensemble_lan.o
integrate/ensemble_nve.o integrate/ensemble_ber.o integrate/ensemble_bdp.o
integrate/ensemble_nhc.o force/tersoff1989.o force/force.o force/nep.o
force/vashishta.o force/potential.o force/fcp.o force/force_constant.o
force/sw.o force/lj.o force/tersoff1988.o force/tersoff_mini.o
force/rebo_mos2.o force/validate.o force/ri.o force/limt.o force/eam.o
measure/cvac.o measure/compute_heat.o measure/hnemd_kappa.o
measure/parse_utilities.o measure/dump_restart.o measure/dos.o
measure/dump_velocity.o measure/dump_thermo.o measure/measure.o
measure/modal_analysis.o measure/shc_harmonic.o measure/hac.o
measure/dump_force.o measure/dump_position.o measure/sdc.o
measure/dump_netcdf.o measure/shc.o measure/compute.o model/neighbor_ON1.o
model/neighbor.o model/read_xyz.o model/box.o model/group.o
model/neighbor_ON2.o utilities/cusolver_wrapper.o utilities/error.o
utilities/read_file.o utilities/main_common.o -o gpumd -lcublas -lcusolver
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c main_phonon/main_phonon.cu
-o main_phonon/main_phonon.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c main_phonon/hessian.cu -o
main_phonon/hessian.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c main_phonon/phonon.cu -o
main_phonon/phonon.o
nvcc main_phonon/main_phonon.o main_phonon/hessian.o
main_phonon/phonon.o minimize/minimizer_sd.o minimize/minimizer.o
minimize/minimize.o force/tersoff1989.o force/force.o force/nep.o
force/vashishta.o force/potential.o force/fcp.o force/force_constant.o
force/sw.o force/lj.o force/tersoff1988.o force/tersoff_mini.o
force/rebo_mos2.o force/validate.o force/ri.o force/limt.o force/eam.o
model/neighbor_ON1.o model/neighbor.o model/read_xyz.o model/box.o
model/group.o model/neighbor_ON2.o utilities/cusolver_wrapper.o
utilities/error.o utilities/read_file.o utilities/main_common.o -o phonon
-lcublas -lcusolver
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c main_nep/nep.cu -o
main_nep/nep.o
nvcc -std=c++11 -O3 -arch=sm_35 -I./ -c main_nep/fitness.cu -o
main_nep/fitness.o
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9220): error:
argument of type "const void *" is incompatible with parameter of type
"const float *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9231): error:
argument of type "const void *" is incompatible with parameter of type
"const float *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9244): error:
argument of type "const void *" is incompatible with parameter of type
"const double *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9255): error:
argument of type "const void *" is incompatible with parameter of type
"const double *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9268): error:
argument of type "const void *" is incompatible with parameter of type
"const float *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9279): error:
argument of type "const void *" is incompatible with parameter of type
"const float *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9292): error:
argument of type "const void *" is incompatible with parameter of type
"const double *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9303): error:
argument of type "const void *" is incompatible with parameter of type
"const double *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9316): error:
argument of type "const void *" is incompatible with parameter of type
"const int *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9327): error:
argument of type "const void *" is incompatible with parameter of type
"const int *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9340): error:
argument of type "const void *" is incompatible with parameter of type
"const long long *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9352): error:
argument of type "const void *" is incompatible with parameter of type
"const long long *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9365): error:
argument of type "const void *" is incompatible with parameter of type
"const int *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9376): error:
argument of type "const void *" is incompatible with parameter of type
"const int *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9389): error:
argument of type "const void *" is incompatible with parameter of type
"const long long *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9401): error:
argument of type "const void *" is incompatible with parameter of type
"const long long *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9410): error:
argument of type "void *" is incompatible with parameter of type "float *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9419): error:
argument of type "void *" is incompatible with parameter of type "float *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9428): error:
argument of type "void *" is incompatible with parameter of type "double
*"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9437): error:
argument of type "void *" is incompatible with parameter of type "double
*"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9445): error:
argument of type "void *" is incompatible with parameter of type "float *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9454): error:
argument of type "void *" is incompatible with parameter of type "float *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9463): error:
argument of type "void *" is incompatible with parameter of type "double
*"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9472): error:
argument of type "void *" is incompatible with parameter of type "double
*"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9481): error:
argument of type "void *" is incompatible with parameter of type "int *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9490): error:
argument of type "void *" is incompatible with parameter of type "int *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9499): error:
argument of type "void *" is incompatible with parameter of type "long
long
*"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9508): error:
argument of type "void *" is incompatible with parameter of type "long
long
*"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9517): error:
argument of type "void *" is incompatible with parameter of type "int *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9526): error:
argument of type "void *" is incompatible with parameter of type "int *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9535): error:
argument of type "void *" is incompatible with parameter of type "long
long
*"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9544): error:
argument of type "void *" is incompatible with parameter of type "long
long
*"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512pfintrin.h(55): error:
argument of type "const void *" is incompatible with parameter of type
"const long long *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512pfintrin.h(63): error:
argument of type "const void *" is incompatible with parameter of type
"const int *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512pfintrin.h(73): error:
argument of type "const void *" is incompatible with parameter of type
"const long long *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512pfintrin.h(81): error:
argument of type "const void *" is incompatible with parameter of type
"const int *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512pfintrin.h(91): error:
argument of type "void *" is incompatible with parameter of type "const
long long *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512pfintrin.h(100): error:
argument of type "void *" is incompatible with parameter of type "const
int
*"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512pfintrin.h(109): error:
argument of type "void *" is incompatible with parameter of type "const
long long *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512pfintrin.h(117): error:
argument of type "void *" is incompatible with parameter of type "const
int
*"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512pfintrin.h(127): error:
argument of type "void *" is incompatible with parameter of type "const
long long *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512pfintrin.h(136): error:
argument of type "void *" is incompatible with parameter of type "const
int
*"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512pfintrin.h(145): error:
argument of type "void *" is incompatible with parameter of type "const
long long *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512pfintrin.h(153): error:
argument of type "void *" is incompatible with parameter of type "const
int
*"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10799):
error: argument of type "const void *" is incompatible with parameter of
type "const float *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10811):
error: argument of type "const void *" is incompatible with parameter of
type "const float *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10823):
error: argument of type "const void *" is incompatible with parameter of
type "const double *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10835):
error: argument of type "const void *" is incompatible with parameter of
type "const double *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10847):
error: argument of type "const void *" is incompatible with parameter of
type "const float *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10859):
error: argument of type "const void *" is incompatible with parameter of
type "const float *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10871):
error: argument of type "const void *" is incompatible with parameter of
type "const double *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10883):
error: argument of type "const void *" is incompatible with parameter of
type "const double *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10895):
error: argument of type "const void *" is incompatible with parameter of
type "const int *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10907):
error: argument of type "const void *" is incompatible with parameter of
type "const int *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10919):
error: argument of type "const void *" is incompatible with parameter of
type "const long long *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10931):
error: argument of type "const void *" is incompatible with parameter of
type "const long long *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10943):
error: argument of type "const void *" is incompatible with parameter of
type "const int *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10955):
error: argument of type "const void *" is incompatible with parameter of
type "const int *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10967):
error: argument of type "const void *" is incompatible with parameter of
type "const long long *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10979):
error: argument of type "const void *" is incompatible with parameter of
type "const long long *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10989):
error: argument of type "void *" is incompatible with parameter of type
"float *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11000):
error: argument of type "void *" is incompatible with parameter of type
"float *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11009):
error: argument of type "void *" is incompatible with parameter of type
"float *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11020):
error: argument of type "void *" is incompatible with parameter of type
"float *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11029):
error: argument of type "void *" is incompatible with parameter of type
"double *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11040):
error: argument of type "void *" is incompatible with parameter of type
"double *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11049):
error: argument of type "void *" is incompatible with parameter of type
"double *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11060):
error: argument of type "void *" is incompatible with parameter of type
"double *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11069):
error: argument of type "void *" is incompatible with parameter of type
"float *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11080):
error: argument of type "void *" is incompatible with parameter of type
"float *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11089):
error: argument of type "void *" is incompatible with parameter of type
"float *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11100):
error: argument of type "void *" is incompatible with parameter of type
"float *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11109):
error: argument of type "void *" is incompatible with parameter of type
"double *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11120):
error: argument of type "void *" is incompatible with parameter of type
"double *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11129):
error: argument of type "void *" is incompatible with parameter of type
"double *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11140):
error: argument of type "void *" is incompatible with parameter of type
"double *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11149):
error: argument of type "void *" is incompatible with parameter of type
"int *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11160):
error: argument of type "void *" is incompatible with parameter of type
"int *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11169):
error: argument of type "void *" is incompatible with parameter of type
"int *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11180):
error: argument of type "void *" is incompatible with parameter of type
"int *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11189):
error: argument of type "void *" is incompatible with parameter of type
"long long *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11200):
error: argument of type "void *" is incompatible with parameter of type
"long long *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11209):
error: argument of type "void *" is incompatible with parameter of type
"long long *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11220):
error: argument of type "void *" is incompatible with parameter of type
"long long *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11229):
error: argument of type "void *" is incompatible with parameter of type
"int *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11240):
error: argument of type "void *" is incompatible with parameter of type
"int *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11249):
error: argument of type "void *" is incompatible with parameter of type
"int *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11260):
error: argument of type "void *" is incompatible with parameter of type
"int *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11269):
error: argument of type "void *" is incompatible with parameter of type
"long long *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11280):
error: argument of type "void *" is incompatible with parameter of type
"long long *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11289):
error: argument of type "void *" is incompatible with parameter of type
"long long *"
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11300):
error: argument of type "void *" is incompatible with parameter of type
"long long *"
92 errors detected in the compilation of
"/tmp/tmpxft_00003047_00000000-6_fitness.cpp1.ii".
makefile:134: recipe for target 'main_nep/fitness.o' failed
make: *** [main_nep/fitness.o] Error 1
