[proteamdavis] Re: Analysis portions

  • From: Paul Limb <paulimb@xxxxxxxxx>
  • To: proteamdavis@xxxxxxxxxxxxx
  • Date: Tue, 17 Aug 2004 12:12:21 -0700

please, no more attached text files.  If you have long lists, please
include in body text; gmail truncates attached text files.

On Mon, 16 Aug 2004 21:39:41 -0700 (PDT), Shankar Sankaran
<sankar85_s@xxxxxxxxx> wrote:
> Hey guys,
> So I have finally split up the analysis portions. Each
> person (Tejal, Nancy, Paul and Me) have twenty files
> to analyze. In the attached text file is each person's
> files to analyze. I have grouped together files of the
> same sequences. At the top of every group is a PDB
> code that has the sequence as a HELIX as opposed to no
> helix. So you can refer to that file when you are
> analyzing a specific group. If it doesn't make sense,
> talk to me.
> 
> Shankar
> 
> __________________________________
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> 
> -- Attached file included as plaintext by Ecartis --
> -- File: assignations.txt
> -- Desc: assignations.txt
> 
> NANCY:
> 
> 1A3G
> aaeit.txt:pdb1nva.ent aaeit NO STRUCTURE        Chain B 63 67
> aaeit.txt:pdb1rrf.ent aaeit NO STRUCTURE        Chain * 136 140
> 
> 1B4U
> *aakaa.txt:pdb1dts.ent aakaa NO STRUCTURE        Chain * 25 29
> aakaa.txt:pdb1e58.ent aakaa NO STRUCTURE        Chain A 236 240
> aakaa.txt:pdb1e6y.ent aakaa NO STRUCTURE        Chain A 1268 1273
> 
> 1AV4
> aarnl.txt:pdb1i4n.ent aarnl NO STRUCTURE        Chain A 96 100
> aarnl.txt:pdb1k73.ent aarnl NO STRUCTURE        Chain E 203 207
> 
> 1BNC
> ackel.txt:pdb1dhp.ent ackel NO STRUCTURE        Chain B 255 259
> ackel.txt:pdb1ire.ent ackel NO STRUCTURE        Chain A 79 83
> 
> 1CD9
> alegi.txt:pdb1exd.ent alegi NO STRUCTURE        Chain A 220 224
> alegi.txt:pdb1gnc.ent alegi NO STRUCTURE        Chain * 92 96
> 
> 1B6G
> alier.txt:pdb1bd0.ent alier NO STRUCTURE        Chain B 150 154
> alier.txt:pdb1f20.ent alier NO STRUCTURE        Chain A 1046 1050
> 
> 1BAN
> aqalg.txt:pdb1a2p.ent aqalg NO STRUCTURE        Chain A 30 34
> aqalg.txt:pdb1aig.ent aqalg NO STRUCTURE        Chain M 137 141
> aqalg.txt:pdb1b20.ent aqalg NO STRUCTURE        Chain A 30 34
> 
> 1AD5
> arvga.txt:pdb1kmk.ent arvga NO STRUCTURE        Chain A 135 139
> arvga.txt:pdb1qff.ent arvga NO STRUCTURE        Chain A 678 683
> 
> 1ACA
> awnel.txt:pdb1nvl.ent awnel NO STRUCTURE        Chain A 57 61
> awnel.txt:pdb1qgu.ent awnel NO STRUCTURE        Chain A 469 473
> 
> TEJAL:
> 
> 1ATI
> deleg.txt:pdb1nyt.ent deleg NO STRUCTURE        Chain C 174 178
> deleg.txt:pdb1r5a.ent deleg NO STRUCTURE        Chain A 190 194
> 
> 1ACA
> dkveel.txt:pdb1ld4.ent dkveel NO STRUCTURE      Chain F 1255 1260
> dkveel.txt:pdb1ld4.ent dkveel NO STRUCTURE      Chain H 4255 4260
> dkveel.txt:pdb1ld4.ent dkveel NO STRUCTURE      Chain J 5255 5260
> 
> 1B70
> ealfa.txt:pdb1fjg.ent ealfa NO STRUCTURE        Chain B 119 123
> ealfa.txt:pdb1fts.ent ealfa NO STRUCTURE        Chain * 490 494
> 
> 1DHR
> eeasa.txt:pdb1bd0.ent eeasa NO STRUCTURE        Chain A 112 116
> eeasa.txt:pdb1nvv.ent eeasa NO STRUCTURE        Chain Q 62 66
> 
> 1ACA
> *eelkk.txt:pdb1l8d.ent eelkk NO STRUCTURE        Chain A 435 439
> eelkk.txt:pdb1nv8.ent eelkk NO STRUCTURE        Chain A 253 257
> eelkk.txt:pdb1nwh.ent eelkk NO STRUCTURE        Chain B 62 66
> 
> 1A4S
> eevvk.txt:pdb1gyl.ent eevvk NO STRUCTURE        Chain B 270 274
> eevvk.txt:pdb1smy.ent eevvk NO STRUCTURE        Chain D 183 187
> 
> 1A50
> eklke.txt:pdb1d3v.ent eklke NO STRUCTURE        Chain A 38 42
> eklke.txt:pdb1e4g.ent eklke NO STRUCTURE        Chain T 120 124
> eklke.txt:pdb1mh1.ent eklke NO STRUCTURE        Chain * 127 131
> 
> 1ATI
> gvlal.txt:pdb1g61.ent gvlal NO STRUCTURE        Chain A 2016 2020
> gvlal.txt:pdb1g61.ent gvlal NO STRUCTURE        Chain B 4016 4020
> gvlal.txt:pdb1ltk.ent gvlal NO STRUCTURE        Chain A 409 413
> 
> PAUL:
> 
> 1AV8
> elkkk.txt:pdb1d1r.ent elkkk NO STRUCTURE        Chain A 67 71
> elkkk.txt:pdb1qn0.ent elkkk NO STRUCTURE        Chain A 96 100
> 
> 1AGW
> glard.txt:pdb1r1w.ent glard NO STRUCTURE        Chain A 1224 1228
> glard.txt:pdb1t46.ent glard NO STRUCTURE        Chain A 812 816
> 
> 1A71
> iaeaa.txt:pdb1g3i.ent iaeaa NO STRUCTURE        Chain X 377 381
> iaeaa.txt:pdb1kmi.ent iaeaa NO STRUCTURE        Chain Z 41 45
> iaeaa.txt:pdb1poi.ent iaeaa NO STRUCTURE        Chain A 201 205
> 
> 1CRX
> iaynt.txt:pdb1kbu.ent iaynt NO STRUCTURE        Chain A 166 170
> iaynt.txt:pdb1nrh.ent iaynt NO STRUCTURE        Chain X 331 335
> 
> 1A17
> laenr.txt:pdb1gyl.ent laenr NO STRUCTURE        Chain A 35 39
> laenr.txt:pdb1lyv.ent laenr NO STRUCTURE        Chain A 274 278
> laenr.txt:pdb1pa9.ent laenr NO STRUCTURE        Chain A 112 116
> 
> 1CG4
> lckqg.txt:pdb1juy.ent lckqg NO STRUCTURE        Chain * 290 294
> lckqg.txt:pdb1ks9.ent lckqg NO STRUCTURE        Chain A 19 23
> 
> 1BUC
> lidel.txt:pdb1b24.ent lidel NO STRUCTURE        Chain A 59 63
> lidel.txt:pdb1b3u.ent lidel NO STRUCTURE        Chain B 15 19
> lidel.txt:pdb1mt3.ent lidel NO STRUCTURE        Chain A 144 148
> 
> 1ATI
> llaea.txt:pdb1b7h.ent llaea NO STRUCTURE        Chain A 347 351
> llaea.txt:pdb1hqm.ent llaea NO STRUCTURE        Chain C 917 921
> llaea.txt:pdb1upc.ent llaea NO STRUCTURE        Chain A 212 216
> 
> SHANKAR:
> 
> 1ADJ
> llqal.txt:pdb1ady.ent llqal NO STRUCTURE        Chain D 416 420
> llqal.txt:pdb1bgc.ent llqal NO STRUCTURE        Chain * 89 93
> 
> 1A2O
> lrale.txt:pdb1ewr.ent lrale NO STRUCTURE        Chain A 257 261
> lrale.txt:pdb1ewr.ent lrale NO STRUCTURE        Chain B 1257 1261
> 
> 1ADJ
> lrevl.txt:pdb1goe.ent lrevl NO STRUCTURE        Chain A 14 19
> lrevl.txt:pdb1gp1.ent lrevl NO STRUCTURE        Chain A 125 129
> 
> 1CRX
> raleg.txt:pdb1r05.ent raleg NO STRUCTURE        Chain A 80 84
> raleg.txt:pdb1v6s.ent raleg NO STRUCTURE        Chain B 302 306
> 
> 1A82
> raleq.txt:pdb1b9i.ent raleq NO STRUCTURE        Chain A 25 29
> raleq.txt:pdb1dbs.ent raleq NO STRUCTURE        Chain * 103 107
> 
> 1BBU
> rfldq.txt:pdb1bbw.ent rfldq NO STRUCTURE        Chain A 438 442
> rfldq.txt:pdb1fce.ent rfldq NO STRUCTURE        Chain * 549 553
> 
> 1AGW
> rival.txt:pdb1exv.ent rival NO STRUCTURE        Chain A 413 417
> rival.txt:pdb1fgk.ent rival NO STRUCTURE        Chain B 756 760
> 
> 1ATI
> rlkar.txt:pdb1icj.ent rlkar NO STRUCTURE        Chain B 663 667
> rlkar.txt:pdb1knq.ent rlkar NO STRUCTURE        Chain A 120 124
> 
> 1BO4
> rraael.txt:pdb1gsn.ent rraael NO STRUCTURE      Chain * 37 42
> rraael.txt:pdb1iwp.ent rraael NO STRUCTURE      Chain G 74 79
> 
> 1B7Y
> vreaa.txt:pdb1b70.ent vreaa NO STRUCTURE        Chain B 714 718
> vreaa.txt:pdb1i7a.ent vreaa NO STRUCTURE        Chain B 106 110
> 
>

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