[overture] Re: make error
- From: Carter Cheng <carter_cheng@xxxxxxxxx>
- To: overture@xxxxxxxxxxxxx
- Date: Tue, 22 Jan 2008 22:39:51 -0800 (PST)
Thanks this seems to have solved the problem. One
followup question I ran check.p and seem to be getting
a few errors. Two of them seem related to IO and in
one case the counts are a bit off (attached). Should I
be concerned?
Thanks in advance,
Carter.
--- Bill Henshaw <henshaw@xxxxxxxx> wrote:
> Dear Carter:
>
> > undefined reference to `_mesa_copy_context'
>
> My guess is that you get this undefined variable
> (from Mesa)
> because you are using a newer version of Mesa than I
> have
> tried. You could try Mesa-6.4.2.
>
> Regards, Bill.
>
> Carter Cheng wrote:
> > I have been recently attempting to build overture
> for
> > a project I am working on and ran into a few
> problems
> > towards the end of the make process which I could
> not
> > resolve. I suspect that I am missing something
> > relatively simple. If someone could help me
> resolve it
> > I would appreciate it.
> >
> > Thanks in advance,
> >
> > Carter
> >
> > (error follows)
> >
> > The error I received was as follows-
> >
> > g++ -fPIC -fpermissive
> > -I/home/cwcheng/Overture.v22/bin/../include -I.
> > -DUSE_MESA
> > -I/home/cwcheng/A++P++-0.7.9d/A++/install/include
> > -I/home/cwcheng/Mesa-7.0.2//include
> -I/usr//include
> > -DBL_USE_DOUBLE -DBL_Solaris -Wno-deprecated
> >
> -I/usr/lib/perl5/5.8.8/i386-linux-thread-multi/CORE
> > -DHAS_MODFL_PROTO -g -o plotStuff
> plotStuffDriver.o
> > plotStuff.o
> > -Wl,-rpath,/home/cwcheng/Overture.v22/bin/../lib
> > -L/home/cwcheng/Overture.v22/bin/../lib -lOverture
> > -lOverture_static -Wl,-rpath,/usr//lib -L/usr//lib
> > -lhdf5 -ljpeg -lz
> >
>
-Wl,-rpath,/home/cwcheng/A++P++-0.7.9d/A++/install/lib
> > -L/home/cwcheng/A++P++-0.7.9d/A++/install/lib
> -lApp
> > -lApp_static -lgfortran
> >
>
-Wl,-rpath,/usr/lib/perl5/5.8.8/i386-linux-thread-multi/CORE
> >
> -L/usr/lib/perl5/5.8.8/i386-linux-thread-multi/CORE
> > -lperl -lresolv -lnsl -ldl -lm -lcrypt -lutil
> > -lpthread -lc
> -Wl,-rpath,/home/cwcheng/Mesa-7.0.2//lib
> > -L/home/cwcheng/Mesa-7.0.2//lib -lGL -lGLU
> -lOSMesa
> > -Wl,-rpath,/usr//lib -L/usr//lib -lXm -L/usr//lib
> > -lXpm -lXp -lXt -lXmu -lXi -lXext -lX11 -lm
> >
> >
>
/home/cwcheng/Overture.v22/bin/../lib/libOverture.so:
> > undefined reference to `_mesa_copy_context'
> > collect2: ld returned 1 exit status
> > make[1]: *** [plotStuff] Error 1
> > make: *** [all] Error 2
> >
> >
> >
> >
> >
>
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>
http://mobile.yahoo.com/;_ylt=Ahu06i62sR8HDtDypao8Wcj9tAcJ
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>
____________________________________________________________________________________
Never miss a thing. Make Yahoo your home page.
http://www.yahoo.com/r/hs====================================================================================
check.p : This perl script will run the Overture regression tests
Usage: check.p
[debug=true/false][grids=false][cadGrids=false][op=false][rap=false]
debug=true/false : see more detailed results printed to the screen if
true.
grids=false : turn off the test for grid generation.
cadGrids=false : turn off the test for grid generation from CAD.
op=false : turn off the test for operators.
rap=false : turn off the test for rapsodi (CAD fixup tests)
==================================================================================
************************************************************************************************
*** Test: build grids : build a collection of overlapping grids in the
sampleGrids directory ***
************************************************************************************************
>>>cd /home/cwcheng/Overture.v22/sampleGrids...
>>>make the sample grids: generate.p
================================================================================
This perl script will run ogen and create many different grids
It will check to see if the grids seem to be correctly generated.
Usage:
generate.p [options]
Options
<gridName> : the name of a single grid to check. By default check all grids.
check=<checkFileDirectory> : directory in which to look for the check files,
default=.
ogen=<name> : specify where the ogen executable is.
cmdFileDirectory=<dir> : directory where to find the command files.
replace (replace check files with those currently generated)
replaceAll (replace .dp and .sp check files with those currently generated)
==============================================================================
*** machine=linux, precision=double
Using the grid generator ../bin/ogen
checking square5.cmd...
..../square5.cmd appears to be correct (compared to
./check.dp/square5.check)
checking square5CC.cmd...
..../square5CC.cmd appears to be correct (compared to
./check.dp/square5CC.check)
checking square10.cmd...
..../square10.cmd appears to be correct (compared to
./check.dp/square10.check)
checking square20.cmd...
..../square20.cmd appears to be correct (compared to
./check.dp/square20.check)
checking square40.cmd...
..../square40.cmd appears to be correct (compared to
./check.dp/square40.check)
checking channelShort.cmd...
..../channelShort.cmd appears to be correct (compared to
./check.dp/channelShort.check)
checking sis.cmd...
..../sis.cmd appears to be correct (compared to ./check.dp/sis.check)
checking cic.cmd...
..../cic.cmd appears to be correct (compared to ./check.dp/cic.check)
checking cic2.cmd...
..../cic2.cmd appears to be correct (compared to ./check.dp/cic2.check)
checking cicCC.cmd...
..../cicCC.cmd appears to be correct (compared to ./check.dp/cicCC.check)
checking cic.4.cmd...
..../cic.4.cmd appears to be correct (compared to ./check.dp/cic.4.check)
checking cicmg.cmd...
..../cicmg.cmd appears to be correct (compared to ./check.dp/cicmg.check)
checking cicAdd.cmd...
..../cicAdd.cmd appears to be correct (compared to
./check.dp/cicAdd.check)
checking cilc.cmd...
..../cilc.cmd appears to be correct (compared to ./check.dp/cilc.check)
checking qcic.cmd...
..../qcic.cmd appears to be correct (compared to ./check.dp/qcic.check)
checking valve.cmd...
..../valve.cmd appears to be correct (compared to ./check.dp/valve.check)
checking valveCC.cmd...
..../valveCC.cmd appears to be correct (compared to
./check.dp/valveCC.check)
checking oneValve.cmd...
..../oneValve.cmd appears to be correct (compared to
./check.dp/oneValve.check)
checking obstacle.cmd...
..../obstacle.cmd appears to be correct (compared to
./check.dp/obstacle.check)
checking inletOutlet.cmd...
..../inletOutlet.cmd appears to be correct (compared to
./check.dp/inletOutlet.check)
checking inletOutletCC.cmd...
..../inletOutletCC.cmd appears to be correct (compared to
./check.dp/inletOutletCC.check)
checking edgeRefinement.cmd...
..../edgeRefinement.cmd appears to be correct (compared to
./check.dp/edgeRefinement.check)
checking naca0012.cmd...
..../naca0012.cmd appears to be correct (compared to
./check.dp/naca0012.check)
checking naca.hype.cmd...
..../naca.hype.cmd appears to be correct (compared to
./check.dp/naca.hype.check)
checking mismatch.cmd...
..../mismatch.cmd appears to be correct (compared to
./check.dp/mismatch.check)
checking mismatchAnnulus.cmd...
..../mismatchAnnulus.cmd appears to be correct (compared to
./check.dp/mismatchAnnulus.check)
checking end.cmd...
..../end.cmd appears to be correct (compared to ./check.dp/end.check)
checking filletThree.cmd...
..../filletThree.cmd appears to be correct (compared to
./check.dp/filletThree.check)
checking mastSail2d.cmd...
..../mastSail2d.cmd appears to be correct (compared to
./check.dp/mastSail2d.check)
checking stir.cmd...
..../stir.cmd appears to be correct (compared to ./check.dp/stir.check)
checking stirSplit.cmd...
..../stirSplit.cmd appears to be correct (compared to
./check.dp/stirSplit.check)
checking hgrid.cmd...
..../hgrid.cmd appears to be correct (compared to ./check.dp/hgrid.check)
checking cgrid.cmd...
..../cgrid.cmd appears to be correct (compared to ./check.dp/cgrid.check)
checking twoBump.cmd...
..../twoBump.cmd appears to be correct (compared to
./check.dp/twoBump.check)
checking innerOuterTest.cmd...
..../innerOuterTest.cmd appears to be correct (compared to
./check.dp/innerOuterTest.check)
checking sinfoil.cmd...
..../sinfoil.cmd appears to be correct (compared to
./check.dp/sinfoil.check)
checking twoSquaresInterface.cmd -factor=1 -name="twoSquaresInterface1.hdf"...
..../twoSquaresInterface.cmd -factor=1 -name="twoSquaresInterface1.hdf"
appears to be correct (compared to ./check.dp/twoSquaresInterface.check)
checking box5.cmd...
..../box5.cmd appears to be correct (compared to ./check.dp/box5.check)
checking box10.cmd...
..../box10.cmd appears to be correct (compared to ./check.dp/box10.check)
checking box20.cmd...
..../box20.cmd appears to be correct (compared to ./check.dp/box20.check)
checking box40.cmd...
..../box40.cmd appears to be correct (compared to ./check.dp/box40.check)
checking bib.cmd...
..../bib.cmd appears to be correct (compared to ./check.dp/bib.check)
checking sib.cmd...
..../sib.cmd appears to be correct (compared to ./check.dp/sib.check)
checking twoBoxesInterface.cmd...
..../twoBoxesInterface.cmd appears to be correct (compared to
./check.dp/twoBoxesInterface.check)
checking sibCC.cmd...
..../sibCC.cmd appears to be correct (compared to ./check.dp/sibCC.check)
checking pipes.cmd...
sh: line 1: 24176 Aborted ../bin/ogen noplot nopause abortOnEnd
./pipes.cmd ogen.out > !
*** There was an error generating pipes.cmd ****
checking pipesCC.cmd...
..../pipesCC.cmd appears to be correct (compared to
./check.dp/pipesCC.check)
checking ellipsoid.cmd...
..../ellipsoid.cmd appears to be correct (compared to
./check.dp/ellipsoid.check)
checking revolve.cmd...
..../revolve.cmd appears to be correct (compared to
./check.dp/revolve.check)
checking revolveCC.cmd...
..../revolveCC.cmd appears to be correct (compared to
./check.dp/revolveCC.check)
checking valve3d.cmd...
..../valve3d.cmd appears to be correct (compared to
./check.dp/valve3d.check)
checking sphereInATube.cmd...
..../sphereInATube.cmd appears to be correct (compared to
./check.dp/sphereInATube.check)
checking tse.cmd...
..../tse.cmd appears to be correct (compared to ./check.dp/tse.check)
checking valvePort.cmd...
..../valvePort.cmd appears to be correct (compared to
./check.dp/valvePort.check)
checking filletTwoCyl.cmd...
..../filletTwoCyl.cmd appears to be correct (compared to
./check.dp/filletTwoCyl.check)
checking joinTwoCyl.cmd...
..../joinTwoCyl.cmd appears to be correct (compared to
./check.dp/joinTwoCyl.check)
checking sub.cmd...
..../sub.cmd appears to be correct (compared to ./check.dp/sub.check)
checking building3.cmd...
..../building3.cmd appears to be correct (compared to
./check.dp/building3.check)
checking valve.hyb.cmd...
..../valve.hyb.cmd appears to be correct (compared to
./check.dp/valve.hyb.check)
checking inletOutlet.hyb.cmd...
..../inletOutlet.hyb.cmd appears to be correct (compared to
./check.dp/inletOutlet.hyb.check)
checking obstacle.hyb.cmd...
..../obstacle.hyb.cmd appears to be correct (compared to
./check.dp/obstacle.hyb.check)
checking mastSail2d.hyb.cmd...
..../mastSail2d.hyb.cmd appears to be correct (compared to
./check.dp/mastSail2d.hyb.check)
checking twoBump.hyb.cmd...
..../twoBump.hyb.cmd appears to be correct (compared to
./check.dp/twoBump.hyb.check)
checking sib.hyb.cmd...
25,28c25,28
< number of Vertexs : 993
< number of Edges : 3543
< number of Faces : 4194
< number of Regions : 1635
---
> number of Vertexs : 992
> number of Edges : 3542
> number of Faces : 4192
> number of Regions : 1634
++++ The check file for sib.hyb.cmd (top) is not the same as the old file
./check.dp/sib.hyb.check (bottom)++++
********************************************************************
********************* There were 2 ERRORS *************************
**** NOTE: some errors may occur due to differences in *****
**** machine precision. If the numbers are similiar then there *****
**** is probably no reason for concern. (try plotting the grid)*****
********************************************************************
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
ERROR return rt=512
An ERROR occured for the test=buildGrids
You may want to check the appropriate log file=.
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
************************************************************************************************
*** Test: grids from cad : build grids from CAD geometries (in the
sampleGrids directory) ***
************************************************************************************************
>>>cd /home/cwcheng/Overture.v22/sampleGrids...
Run /home/cwcheng/Overture.v22/sampleGrids/gridsFromCad.p
================================================================================
This perl script will build some grids from CAD
It will check to see if the grids seem to be correctly generated.
Usage:
gridsFromCad.p [options]
Options
no options yet
==============================================================================
*** precision=double
Using the grid generator /home/cwcheng/Overture.v22//bin/ogen
Using rap version: /home/cwcheng/Overture.v22//bin/rap
Using mbuilder version: /home/cwcheng/Overture.v22//bin/mbuilder
Running: /home/cwcheng/Overture.v22//bin/rap noplot nopause abortOnEnd
asmoNoWheels.cmd > gridsFromCad.out...
...success
Running: /home/cwcheng/Overture.v22//bin/mbuilder noplot nopause abortOnEnd
asmoBody.cmd > gridsFromCad.out...
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 thread 3086161696.
Back trace follows.
#000: H5F.c line 1327 in H5Fis_hdf5(): unable to open file
major(05): Low-level I/O layer
minor(29): Unable to initialize object
#001: H5FD.c line 1045 in H5FD_open(): open failed
major(22): Virtual File Layer
minor(29): Unable to initialize object
#002: H5FDsec2.c line 367 in H5FD_sec2_open(): unable to open file
major(04): File interface
minor(17): Unable to open file
#003: H5FDsec2.c line 367 in H5FD_sec2_open(): No such file or directory
major(03): Internal HDF5 error
minor(87): System error message
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 thread 3086161696.
Back trace follows.
#000: H5F.c line 2049 in H5Fopen(): unable to open file
major(04): File interface
minor(17): Unable to open file
#001: H5F.c line 1726 in H5F_open(): unable to open file
major(04): File interface
minor(17): Unable to open file
#002: H5FD.c line 1045 in H5FD_open(): open failed
major(22): Virtual File Layer
minor(29): Unable to initialize object
#003: H5FDsec2.c line 367 in H5FD_sec2_open(): unable to open file
major(04): File interface
minor(17): Unable to open file
#004: H5FDsec2.c line 367 in H5FD_sec2_open(): No such file or directory
major(03): Internal HDF5 error
minor(87): System error message
sh: line 1: 24237 Aborted
/home/cwcheng/Overture.v22//bin/mbuilder noplot nopause abortOnEnd asmoBody.cmd
> gridsFromCad.out
ERROR running /home/cwcheng/Overture.v22//bin/mbuilder noplot nopause
abortOnEnd asmoBody.cmd > gridsFromCad.out. Check the logfile gridsFromCad.out
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
ERROR return rt=256
An ERROR occured for the test=grids from cad
You may want to check the appropriate log file=.
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
************************************************************************************************
*** Test: test operators and grid functions (in the tests directory)
***
************************************************************************************************
>>>cd /home/cwcheng/Overture.v22/tests...
>>>run checkop.p
================================================================================
This perl script will run some regression tests on grid functions and operators.
Usage:
checkop.p [<application>] (or `perl checkop.p')
Notes:
Applications:
tderivatives : tests derivatives in the operators.
tbcc : tests boundary conditions for coefficient matrices.
tbc : tests explicit boundary conditions.
tcm3 : tests coefficient matrix solver on a CompositeGrid
==============================================================================
*** precision=double, parallel= ****
running tderivatives...
Running: ./tderivatives > tderivatives.out
compare files tderivatives.dp.check.new and tderivatives.dp.check
smartDiff: files tderivatives.dp.check.new and tderivatives.dp.check agree.
...tderivatives appears to be correct
running tbcc...
Running: ./tbcc > tbcc.out
compare files tbcc.dp.check.new and tbcc.dp.check
smartDiff: files tbcc.dp.check.new and tbcc.dp.check agree.
...tbcc appears to be correct
running tbc...
Running: ./tbc > tbc.out
compare files tbc.dp.check.new and tbc.dp.check
smartDiff: files tbc.dp.check.new and tbc.dp.check agree.
...tbc appears to be correct
running tcm3...
Running: ./tcm3 -check > tcm3.out
compare files tcm3.dp.check.new and tcm3.dp.check
smartDiff: files tcm3.dp.check.new and tcm3.dp.check agree.
...tcm3 appears to be correct
==================================================
============ Test apparently successful ==========
==================================================
>>>tests of operators and grid functions successful!
************************************************************************************************
*** Run the rapsodi tests (CAD fixup etc.) (in the sampleMappings directory)
***
************************************************************************************************
>>>cd /home/cwcheng/Overture.v22/sampleMappings...
>>>run the rap tests: check.p and heal.p
================================================================================
This perl script will run rap and create many different geometries
It will check to see if the geometry seem to be correctly generated.
Usage:
check.p [<geoName>] [noplot] [check=<checkFileDirectory>][special=<dir>}
(or `perl check.p')
<checkFileDirectory> = directory in which to look for the check files,
default=.
<geoName> = the name of a single geometry to check. By default check all
geometries.
noplot = do not plot results.
special = location of special files that are not distributed.
==============================================================================
Using the geometry generator ../bin/rap
checking ship-5415...
...ship-5415 could be read in and displayed
checking ship-kcs...
...ship-kcs could be read in and displayed
checking ship-kvlcc...
...ship-kvlcc could be read in and displayed
checking ship-5-parts...
...ship-5-parts could be read in and displayed
checking asmo...
...asmo could be read in and displayed
==================================================
============ Test apparently successful ==========
==================================================
rap test check.p successful
================================================================================
This perl script will run rap and heal a few different geometries
It will check to see if the healing commands seem to work.
Usage:
heal.p [<geoName>] [noplot][check=<checkFileDirectory>][special=<dir>} (or
`perl heal.p')
<checkFileDirectory> = directory in which to look for the check files,
default=.
<geoName> = the name of a single geometry to check. By default check all
geometries.
noplot = do not plot results.
special = location of special files that are not distributed.
==============================================================================
Using the geometry generator ../bin/rap
checking ship-5415-fix...
...ship-5415-fix could be read in and healed
==================================================
============ Test apparently successful ==========
============ with 0 broken surfaces ==========
==================================================
>>>rap tests successful!
************************************************************************************************
****************** Tests: passed = 2, failed=2
*****************************************
************************************************************************************************
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