OK, so re-config and re-make got past that. However, check.p puked
all over the place including:
dyld: Library not loaded: libOverture.dylib
(full log file attached).
Best,
Joe
On Mar 5, 2012, at 4:58 PM, J. P. Bernstein wrote:
> Sorry all. I mean that I DID do make clean before.
>
> On Mar 5, 2012, at 4:56 PM, J. P. Bernstein wrote:
>
>> That must be it.
>>
>> Kyle, the output says it wrote the file. I just did a reconfig,
and the file was there. Indeed, I did not make clean before.
>>
>> Best,
>>
>> Joe
>>
>>
>> On Mar 5, 2012, at 4:52 PM, Erik Wilson wrote:
>>
>>>
>>> If I remember correctly a "make clean" removes that file, which
has bit me in the past.
>>>
>>>
>>> On 03/05/2012 03:46 PM, Kyle K. Chand wrote:
>>>> Well, that is funny, one of the last things Overture's
configure script does (supposed to do!) is write
configure.options... There is even a check to make sure it opened
correctly.
>>>> What is the output when you run Overture's configure script?
You might want to do this in another build directory so it does not
mess up all the dependencies.
>>>>
>>>> Kyle
>>>>
>>>> mailto: chand1@xxxxxxxx
>>>> phoneto: (925) 422 7740
>>>>
>>>>
>>>>
>>>> On Mar 5, 2012, at 2:37 PM, J. P. Bernstein wrote:
>>>>
>>>>> Thanks, Kyle.
>>>>>
>>>>> That worked. After several fixes for library location issues,
make concluded without errors (is there supposed to be a "success"
message)? I will send an email to the list recounting each step that
I had to do to build Overture on Mac OSX Lion once I am able to run
the tests (see below).
>>>>>
>>>>> When I tried to run check.p, I got:
>>>>>
>>>>> [alcfwl150:local/ztar/Overture.v24] root# ./check.p
>>>>> unable to open /usr/local/Overture.v24/configure.options.
Check your Overture env variable.
>>>>> 1 at ./check.p line 30.
>>>>>
>>>>> The file in question is, indeed, missing from $Overture. Has
it been superseded, or something?
>>>>>
>>>>> Best,
>>>>>
>>>>> Joe
>>>>>
>>>>> On Mar 5, 2012, at 12:48 PM, Kyle K. Chand wrote:
>>>>>
>>>>>> Hi Joe,
>>>>>>
>>>>>> I have two fixes for this, one is nice and cryptic. I can't
remember what exactly is broken about the configure (I thought it
was fixed) but the configure script think you are using a build of
Mesa rather than a distribution on the system or Macports (hence the
relative directory references in the include file). What is your
OpenGL set to?
>>>>>>
>>>>>> fix 1: Change $Overture/include/OvertureDefines.h so that the
OV_USE_MESA variable is set to:
>>>>>> #define OV_USE_MESA 2
>>>>>> Note you will need to manually change this every time you do
a configure
>>>>>>
>>>>>> fix 2: Build your own copy of the Mesa libraries somewhere
and set your OpenGL environment variable accordingly. The nice
thing about this fix is that you will get offscreen rendering for
hardcopies (and no worries upon re-running configure).
>>>>>>
>>>>>> Regards,
>>>>>> Kyle
>>>>>>
>>>>>> mailto: chand1@xxxxxxxx
>>>>>> phoneto: (925) 422 7740
>>>>>>
>>>>>>
>>>>>>
>>>>>> On Mar 5, 2012, at 9:31 AM, J. P. Bernstein wrote:
>>>>>>
>>>>>>> Hello Kyle,
>>>>>>>
>>>>>>> The command you suggested did not work (see below). I was
able to work around the issue by doing "sudo tcsh" to open a root
shell and making a symbolic line to the Mesa lib (again, see below).
>>>>>>>
>>>>>>> The make ran for some time and then failed with:
>>>>>>>
>>>>>>> --------------------
>>>>>>> osRender.C:215:45: error: GL/../../src/mesa/main/context.h:
No such file or directory
>>>>>>> osRender.C:230: error: 'GLcontext' does not name a type
>>>>>>> osRender.C:231: error: ISO C++ forbids declaration of
'GLvisual' with no type
>>>>>>> osRender.C:231: error: expected ';' before '*' token
>>>>>>> osRender.C:232: error: ISO C++ forbids declaration of
'GLframebuffer' with no type
>>>>>>> osRender.C:232: error: expected ';' before '*' token
>>>>>>> osRender.C:241: error: ISO C++ forbids declaration of
'GLchan' with no type
>>>>>>> osRender.C:241: error: expected ';' before '*' token
>>>>>>> osRender.C: In member function 'int
GL_GraphicsInterface::offScreenRenderMesa(const char*,
GraphicsParameters&)':
>>>>>>> osRender.C:299: error: 'GLcontext' was not declared in this
scope
>>>>>>> osRender.C:299: error: 'CC' was not declared in this scope
>>>>>>> osRender.C:299: error: expected primary-expression before
')' token
>>>>>>> osRender.C:299: error: expected `;' before
'OSMesaGetCurrentContext'
>>>>>>> osRender.C:313: error: 'oldCC' was not declared in this scope
>>>>>>> osRender.C:313: error: expected primary-expression before
')' token
>>>>>>> osRender.C:313: error: 'struct osmesa_context' has no member
named 'gl_ctx'
>>>>>>> osRender.C:314: error: 'struct osmesa_context' has no member
named 'gl_ctx'
>>>>>>> osRender.C:314: error: expected primary-expression before
')' token
>>>>>>> osRender.C:314: error: expected `;' before 'CC'
>>>>>>> osRender.C:322: error: expected primary-expression before
')' token
>>>>>>> osRender.C:322: error: 'struct osmesa_context' has no member
named 'gl_ctx'
>>>>>>> osRender.C:322: error: '_mesa_copy_context' was not declared
in this scope
>>>>>>> osRender.C:359: error: 'struct osmesa_context' has no member
named 'gl_ctx'
>>>>>>> osRender.C:359: error: expected primary-expression before
')' token
>>>>>>> osRender.C:359: error: expected `)' before 'oldCC'
>>>>>>> make[1]: *** [osRender.o] Error 1
>>>>>>> make: *** [all] Error 2
>>>>>>> --------------------
>>>>>>>
>>>>>>> Any thoughts?
>>>>>>>
>>>>>>> Best,
>>>>>>>
>>>>>>> Joe
>>>>>>>
>>>>>>>
>>>>>>> ++++++++++sudo and source issue++++++++++
>>>>>>> sudo "source defenv; ./configure darwin useHDF5 FC=gfortran"
>>>>>>>
>>>>>>> resulted in:
>>>>>>>
>>>>>>> --------------------
>>>>>>> usage: sudo -h | -K | -k | -L | -V
>>>>>>> usage: sudo -v [-AknS] [-g groupname|#gid] [-p prompt] [-u
user name|#uid]
>>>>>>> usage: sudo -l[l] [-AknS] [-g groupname|#gid] [-p prompt] [-
U user name] [-u user
>>>>>>> name|#uid] [-g groupname|#gid] [command]
>>>>>>> usage: sudo [-AbEHknPS] [-C fd] [-g groupname|#gid] [-p
prompt] [-u user name|#uid]
>>>>>>> [-g groupname|#gid] [VAR=value] [-i|-s] [<command>]
>>>>>>> usage: sudo -e [-AknS] [-C fd] [-g groupname|#gid] [-p
prompt] [-u user name|#uid]
>>>>>>> file ...
>>>>>>> --------------------
>>>>>>>
>>>>>>> So I tried this:
>>>>>>>
>>>>>>> --------------------
>>>>>>> alcfwl150:Overture.v24 jpbernst$ sudo source defenv; sudo ./
configure darwin useHDF5 FC=gfortran
>>>>>>> Password:
>>>>>>> sudo: source: command not found
>>>>>>> *** configure for machine = darwin ****
>>>>>>> *** machineType = [x86_64] ****
>>>>>>> First checking for proper definition of Overture
environmental variables:
>>>>>>> ERROR: environmental variable APlusPlus = DOES NOT EXIST
>>>>>>> ERROR: environmental variable OpenGL = DOES NOT EXIST
>>>>>>> ERROR: environmental variable HDF = DOES NOT EXIST
>>>>>>> ERROR: environmental variable Overture = DOES NOT EXIST
>>>>>>> ERROR: environmental variable XLIBS = DOES NOT EXIST
>>>>>>> ERROR: Unable to find OpenGL library libGL or libMesaGL in /
lib64
>>>>>>> Check the OpenGL environmental variable and try again
>>>>>>> INFO: I am going to copy my version of the GLw files into
Overture/static directory
>>>>>>> Checking for the Motif header files in /include/Xm/
>>>>>>> Unable to find the Motif or Lesstif file /include/Xm/Xm.h
>>>>>>> Check your MOTIF environmental variable, MOTIF=[]. It seems
to be incorrect.
>>>>>>> --------------------
>>>>>>>
>>>>>>> I then tried the following, which worked, as far as the env
vars are concerned, but uncovered a Mesa location issue:
>>>>>>>
>>>>>>> --------------------
>>>>>>> alcfwl150:Overture.v24 jpbernst$ sudo tcsh
>>>>>>> [alcfwl150:/usr/local/Overture.v24] root# source defenv
>>>>>>> [alcfwl150:/usr/local/Overture.v24] root# ./configure darwin
useHDF5 FC=gfortran
>>>>>>> *** configure for machine = darwin ****
>>>>>>> *** machineType = [x86_64] ****
>>>>>>> First checking for proper definition of Overture
environmental variables:
>>>>>>> APlusPlus = /usr/local/A++P++-0.8.0/A++/install
>>>>>>> OpenGL = /opt/local
>>>>>>> HDF = /opt/local
>>>>>>> Overture = /usr/local/Overture.v24
>>>>>>> XLIBS = /opt/local
>>>>>>> ERROR: Unable to find OpenGL library libGL or libMesaGL in /
opt/local/lib64
>>>>>>> --------------------
>>>>>>>
>>>>>>> I devised the following fix:
>>>>>>>
>>>>>>> --------------------
>>>>>>> [alcfwl150:/usr/local/Overture.v24] root# mkdir /opt/local/
lib64
>>>>>>> [alcfwl150:/usr/local/Overture.v24] root# ln -s /opt/local/
lib/libOSMesa.7.dylib /opt/local/lib64/libMesaGL.dylib
>>>>>>> [alcfwl150:/usr/local/Overture.v24] root# ./configure darwin
useHDF5 FC=gfortran *** configure for machine = darwin ****
>>>>>>> *** machineType = [x86_64] ****
>>>>>>> First checking for proper definition of Overture
environmental variables:
>>>>>>> APlusPlus = /usr/local/A++P++-0.8.0/A++/install
>>>>>>> OpenGL = /opt/local
>>>>>>> HDF = /opt/local
>>>>>>> Overture = /usr/local/Overture.v24
>>>>>>> XLIBS = /opt/local
>>>>>>> Using Mesa `OpenGL' libraries since libMesaGL found in /opt/
local/lib64
>>>>>>> Mesa has GLwDrawA.h in the include dir
>>>>>>> INFO: I am going to copy my version of the GLw files into
Overture/static directory
>>>>>>> Checking for the Motif header files in /opt/local/include/Xm/
>>>>>>> Using motif.
>>>>>>> perlloc = [/opt/local/lib/perl5/5.12.3/darwin-multi-2level/
CORE]
>>>>>>> Using perl headers and lib from perllibs=[/opt/local/lib/
perl5/5.12.3/darwin-multi-2level/CORE]
>>>>>>> Will link to the libraries perllibs=[-lperl -ldl -lm -lutil -
lc]
>>>>>>> Using configuration file config/MakeDefs.darwin
>>>>>>> Using hdf 5
>>>>>>> Using Compilers: C++=g++, C=gcc, Fortran=gfortran (base
version: C++=g++, C=gcc, Fortran=gfortran)
>>>>>>> Using g++ version g++ (GCC) 4.3.6
>>>>>>> gcc lib directory = /opt/local/lib64
>>>>>>> **Overture will be compiled in double precision
>>>>>>> debugging turned on, using debugFlag=-g.
>>>>>>> Checking for bool support
>>>>>>> bool is supported.
>>>>>>> Checking for exceptions support
>>>>>>> exceptions are supported.
>>>>>>> Checking for STL availability. $STLINC=
>>>>>>> stl is available using std include format
>>>>>>> the compiler understands namespaces
>>>>>>>
>>>>>>> the compiler understands default template arguments
>>>>>>>
>>>>>>> the compiler understands explicit
>>>>>>> Create the Makefile for directory: mapUtil
>>>>>>> Create the Makefile for directory: phoneyFiles
>>>>>>> Create the Makefile for directory: Cad
>>>>>>> Create the Makefile for directory: DataBase
>>>>>>> Create the Makefile for directory: Grid
>>>>>>> Create the Makefile for directory: GridFunction
>>>>>>> Create the Makefile for directory: GridGenerator
>>>>>>> Create the Makefile for directory: Mapping
>>>>>>> Create the Makefile for directory: Oges
>>>>>>> Create the Makefile for directory: Ogshow
>>>>>>> Create the Makefile for directory: otherStuff
>>>>>>> Create the Makefile for directory: bin
>>>>>>> Create the Makefile for directory: boxlib
>>>>>>> Create the Makefile for directory: lib
>>>>>>> Create the Makefile for directory: primer
>>>>>>> Create the Makefile for directory: sampleGrids
>>>>>>> Create the Makefile for directory: static
>>>>>>> Create the Makefile for directory: templates
>>>>>>> Create the Makefile for directory: examples
>>>>>>> Create the Makefile for directory: Ogmg
>>>>>>> Create the Makefile for directory: tests
>>>>>>>
>>>>>>> configuration options written to file configure.options
>>>>>>>
>>>>>>> Make options saved to file make.options.
>>>>>>>
>>>>>>> Build the Makefile in the main directory
>>>>>>> done configuration.
>>>>>>>
>>>>>>>
****************************************************************************************************
>>>>>>> WARNING: Environment variable LANG=en_US.UTF-8 -- Overture
may not work with this language.
>>>>>>> European languages may reverse the meaning of `.' and ','
in numbers such a 3,14 or 3.14
>>>>>>> and then Overture will not parse command files properly.
>>>>>>> Type `locale' to see your language settings. You may need
to change to the language `en_US'
>>>>>>>
****************************************************************************************************
>>>>>>> type `make' to build Overture (or 'make -j2' for a parallel
make with 2 processes).
>>>>>>> type `make rapsodi' to build the Rapsodi libraries and rap.
>>>>>>> --------------------
>>>>>>>
>>>>>>> On Mar 2, 2012, at 5:02 PM, Kyle K. Chand wrote:
>>>>>>>
>>>>>>>> Joe,
>>>>>>>>
>>>>>>>> The sudo might be breaking it as it probably starts a new
shell. You can try this:
>>>>>>>> sudo "source defenv; ./configure darwin useHDF5 FC=gfortran"
>>>>>>>> Note that you will then have to do
>>>>>>>> sudo "source defenv; make"
>>>>>>>> to actually build it, assuming this works. This will not
work if the default shell for root is something other than csh. For
example, if it is bash then you will need to
>>>>>>>> write a bash version of defenv that you can execute in the
sudo command.
>>>>>>>>
>>>>>>>> Or login as root and do the install if you need it to have
root ownership.
>>>>>>>>
>>>>>>>> regards,
>>>>>>>> Kyle
>>>>>>>>
>>>>>>>> mailto: chand1@xxxxxxxx
>>>>>>>> phoneto: (925) 422 7740
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> On Mar 2, 2012, at 2:28 PM, J. P. Bernstein wrote:
>>>>>>>>
>>>>>>>>> Thanks, Kyle. That worked with:
>>>>>>>>>
>>>>>>>>> sudo ./configure --with-CC="/opt/local/bin/gcc -I/usr/
include/malloc" --with-CXX="/opt/local/bin/g++ -I/usr/include/
malloc" --prefix=`pwd`
>>>>>>>>>
>>>>>>>>> Moving on to the next step, the enviers set in defenv are
not being inherited when trying to build Overture. I have the
following set:
>>>>>>>>>
>>>>>>>>> % cat defenv
>>>>>>>>> #! /bin/csh -f
>>>>>>>>> #
>>>>>>>>> # Define environment variables for Overture
>>>>>>>>> #
>>>>>>>>> # see the install notes on the web for further explanation
or Overture/doc/install.tex
>>>>>>>>> #
>>>>>>>>> # edit this file and change as appropriate for your system,
>>>>>>>>> # then type 'source defenv'
>>>>>>>>>
>>>>>>>>> # You will need to change the following:
>>>>>>>>> setenv XLIBS /opt/local
>>>>>>>>> setenv MOTIF /opt/local
>>>>>>>>> setenv OpenGL /opt/local
>>>>>>>>> setenv HDF /opt/local
>>>>>>>>> setenv APlusPlus /usr/local/A++P++-0.8.0/A++/install
>>>>>>>>> setenv Overture /usr/local/Overture.v24
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> but get:
>>>>>>>>>
>>>>>>>>> % sudo ./configure darwin useHDF5 FC=gfortran
>>>>>>>>> Password:
>>>>>>>>> *** configure for machine = darwin ****
>>>>>>>>> *** machineType = [x86_64] ****
>>>>>>>>> First checking for proper definition of Overture
environmental variables:
>>>>>>>>> ERROR: environmental variable APlusPlus = DOES NOT EXIST
>>>>>>>>> ERROR: environmental variable OpenGL = DOES NOT EXIST
>>>>>>>>> ERROR: environmental variable HDF = DOES NOT EXIST
>>>>>>>>> ERROR: environmental variable Overture = DOES NOT EXIST
>>>>>>>>> ERROR: environmental variable XLIBS = DOES NOT EXIST
>>>>>>>>> ERROR: Unable to find OpenGL library libGL or libMesaGL
in /lib64
>>>>>>>>> Check the OpenGL environmental variable and try again
>>>>>>>>> INFO: I am going to copy my version of the GLw files into
Overture/static directory
>>>>>>>>> Checking for the Motif header files in /include/Xm/
>>>>>>>>> Unable to find the Motif or Lesstif file /include/Xm/Xm.h
>>>>>>>>> Check your MOTIF environmental variable, MOTIF=[]. It
seems to be incorrect.
>>>>>>>>>
>>>>>>>>> Any thoughts?
>>>>>>>>>
>>>>>>>>> Sorry for the basic questions; while I am very experienced
with linux, I am rather new to mac.
>>>>>>>>>
>>>>>>>>> Best,
>>>>>>>>>
>>>>>>>>> Joe
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> On Mar 1, 2012, at 4:52 PM, Kyle K. Chand wrote:
>>>>>>>>>
>>>>>>>>>> Joe,
>>>>>>>>>>
>>>>>>>>>> Below are some more recent instructions for a parallel
build of Overture on a Mac, including an A++P++ configure line which
does not include -mlongcall (that was for older PowerPC macs, I
believe).
>>>>>>>>>> For a serial build, the A++ configure line I currently
use (on a OS X 10.5.8 machine) is:
>>>>>>>>>> % ./configure --with-CC="/Users/chand1/MacPorts/bin/gcc -
I/usr/include/malloc" --with-CXX="/Users/chand1/MacPorts/bin/g++ -I/
usr/include/malloc" --prefix="/Users/chand1/Overture/A++P++/A++P+
+-0.7.9d/gcc4.3.3"
>>>>>>>>>> Note, my MacPorts is not installed in /opt/local, you
will need to adjust the configure line appropriately.
>>>>>>>>>>
>>>>>>>>>> For Overture, one would use
>>>>>>>>>> % configure darwin useHDF5 FC=gfortran
>>>>>>>>>> or something similar.
>>>>>>>>>>
>>>>>>>>>> Regards,
>>>>>>>>>> Kyle
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> mailto: chand1@xxxxxxxx
>>>>>>>>>> phoneto: (925) 422 7740
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> Begin forwarded message:
>>>>>>>>>>
>>>>>>>>>>> From: Kyle K.Chand <chand1@xxxxxxxx>
>>>>>>>>>>> Date: September 24, 2010 3:44:20 PM PDT
>>>>>>>>>>> To: Ramesh Balakrishnan <bramesh@xxxxxxxxxxxx>
>>>>>>>>>>> Cc: "overture@xxxxxxxxxxxxx" <overture@xxxxxxxxxxxxx>
>>>>>>>>>>> Subject: [overture] Parallel Overture on Mac
>>>>>>>>>>> Reply-To: "overture@xxxxxxxxxxxxx"
<overture@xxxxxxxxxxxxx>
>>>>>>>>>>>
>>>>>>>>>>> Hi Ramesh,
>>>>>>>>>>>
>>>>>>>>>>> I managed to build Overture on the Mac. There were a
few odd things.
>>>>>>>>>>>
>>>>>>>>>>> 0) It appears that openmpi is on the mac by default in /
usr, I had not
>>>>>>>>>>> known that.
>>>>>>>>>>> You can also use the openmpi and mpich or lam mpi from
macports.
>>>>>>>>>>>
>>>>>>>>>>> 1) the configure line for A++P++ is:
>>>>>>>>>>>
>>>>>>>>>>> ./configure --prefix=`pwd` --without-PADRE --disable-
shared --disable-
>>>>>>>>>>> mpirun-check --enable-PXX --with-CC="gcc -I/usr/include/
malloc" --with-
>>>>>>>>>>> CXX="g++ -I/usr/include/malloc" --with-mpi-libs="-
lmpi_cxx -lmpi"
>>>>>>>>>>>
>>>>>>>>>>> 2) To build A++P++, use :
>>>>>>>>>>> make MAKE=make install
>>>>>>>>>>>
>>>>>>>>>>> 3) make sure you have a parallel build of HDF5
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> 4) configure Overture using something like:
>>>>>>>>>>> ./configure darwin parallel useHDF5 FC=gfortran
>>>>>>>>>>>
>>>>>>>>>>> 5) Now you need to fix the PFLAGS variable in $Overture/
GridFunction/
>>>>>>>>>>> Makefile in order to add -I/usr/include/malloc
>>>>>>>>>>>
>>>>>>>>>>> 6) In the primer directory Makefile, eliminate the -Wl-
weak-
>>>>>>>>>>> framework,VecLib option from all the make variables
>>>>>>>>>>>
>>>>>>>>>>> 7) Fix ParallelUtility.C, the bool version of broadCast
should be:
>>>>>>>>>>> void
>>>>>>>>>>> broadCast( bool & value, const int & fromProcessor )
>>>>>>>>>>> {
>>>>>>>>>>> #ifdef USE_PPP
>>>>>>>>>>> if( Communication_Manager::Number_Of_Processors==0 )
>>>>>>>>>>> return;
>>>>>>>>>>>
>>>>>>>>>>> int tmpValue = value;
>>>>>>>>>>> MPI_Bcast( &tmpValue, 1, MPI_INT, fromProcessor,
MPI_COMM_WORLD);
>>>>>>>>>>> value = tmpValue;
>>>>>>>>>>>
>>>>>>>>>>> #endif
>>>>>>>>>>> }
>>>>>>>>>>>
>>>>>>>>>>> 8) Now you should be able to build Overture and also
build the
>>>>>>>>>>> examples primer/pppWave and primer/pwave
>>>>>>>>>>>
>>>>>>>>>>> I was able to build and run pppWave and pwave with two
MPI tasks on my
>>>>>>>>>>> mac laptop. We are working the fixes
>>>>>>>>>>> into the next release.
>>>>>>>>>>>
>>>>>>>>>>> Let me know how this works!
>>>>>>>>>>> Kyle
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> mailto: chand1@xxxxxxxx
>>>>>>>>>>> phoneto: (925) 422 7740
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>
>>>
>>
>>
>
>
<check.log>
