[overture] Re: Building v24 on Blue Gene P
- From: "J. P. Bernstein" <astro@xxxxxxx>
- To: overture@xxxxxxxxxxxxx
- Date: Fri, 25 May 2012 10:11:51 -0500 (CDT)
Thanks, Erik.
I tried that and got:
make[1]: Entering directory
`/gpfs/home/jpbernst/Code/Overture/Overture.v24/GridFunction'
perl ../config/makeDepend -f depend -Y --
-I/home/jpbernst/Code/Overture/Overture.v24/include
-I/home/jpbernst/Code/Overture/A++P++-0.8.0/P++/install/include -DUSE_MESA
-I/home/jpbernst/Code/Overture/A++P++-0.8.0/P++/install/include
-IIGNORE_GL/include -DBL_USE_DOUBLE -DBL_Solaris -- BoundaryOperators.C . . .
p_descriptor.C
run makedepend ...
...done
touch depend_date
mpixlf77_r -O -w -qarch=450d -qtune=450 -qmaxmem=-1 -qpic
-DBL_AUTO_INSTANTIATE -qautodbl=dbl4
-I/home/jpbernst/Code/Overture/Overture.v24/include
-I/home/jpbernst/Code/Overture/A++P++-0.8.0/P++/install/include -c coeff.f
bgxlf_r: 1501-221 (S) cannot exec program L_AUTO_INSTANTIATExlfentry - No such
file or directory
1501-511 Compilation failed for file coeff.f.
make[1]: *** [coeff.o] Error 255
make[1]: Leaving directory
`/gpfs/home/jpbernst/Code/Overture/Overture.v24/GridFunction'
make: *** [all] Error 2
Thus, it looks like something is getting mangled. So far, I have not been able
to track it down. Can anyone suggest places to look for the cause of this?
Thanks,
Joe
----- Original Message -----
From: "Erik Wilson" <wilsone@xxxxxx>
To: overture@xxxxxxxxxxxxx
Sent: Thursday, May 24, 2012 3:40:19 PM
Subject: [overture] Re: Building v24 on Blue Gene P
Hi Joe,
I think the answer is here:
https://cismwiki.bu.edu/wiki/Lfm/Prerequisites/Overture
"Add the flag-DBL_AUTO_INSTANTIATE to cc_FLAGS, CC_FLAGS and FF_FLAGS in
config/MakeDefs.[ARCHITECTURE]. Then run gmake clean and return to step
2 above (re-run configure and gmake to rebuild Overture)."
Cheers,
-Erik
On 05/24/2012 12:29 PM, J. P. Bernstein wrote:
> Hello All,
>
> Due to problems with undefined references in the Mesa-7.2 build, I
> implemented by hand in stock Overturev24 the noGL functionality, were
> appropriate, from the older CISM-modified version of Overture from:
>
> https://cismwiki.bu.edu/Download/Overture
>
> I then extended the Overturev24 noX11 functionality to deal with the
> $Overture/static directory build problems from previous emails. In addition,
> I set:
>
> #undef OV_USE_UNDERSCORE
>
> in OvertureDefine.h.in as BG/P does not recognize underscores in FORTRAN
> calls from C++. I also removed:
>
> -DBL_FORT_USE_UNDERSCORE
>
> from the boxlib compilation.
>
> Now, upon doing a serial build, I get to the $Overture/bin compilation and
> then see the following failures:
>
> make[1]: Entering directory
> `/gpfs/home/jpbernst/Code/Overture/serial/Overture.v24/bin'
> perl ../config/makeDepend -f depend -Y --
> -I/home/jpbernst/Code/Overture/serial/Overture.v24/bin/../include
> -I/home/jpbernst/Code/Overture/serial/A++P++-0.8.0/A++/install/include
> -I/home/jpbernst/Code/Overture/serial/A++P++-0.8.0/A++/install/include
> -DBL_USE_DOUBLE -DBL_Solaris -- plotStuffDriver.C plotStuffFunction.C
> ogenDriver.C ogenFunction.C rap.C mbuilder.C ps2ppm.C decompress.C
> run makedepend ...
> ...done
> touch depend
> make[1]: Leaving directory
> `/gpfs/home/jpbernst/Code/Overture/serial/Overture.v24/bin'
> make[1]: Entering directory
> `/gpfs/home/jpbernst/Code/Overture/serial/Overture.v24/bin'
> xlC -qpic -qmaxmem=-1
> -I/home/jpbernst/Code/Overture/serial/Overture.v24/bin/../include
> -I/home/jpbernst/Code/Overture/serial/A++P++-0.8.0/A++/install/include
> -I/home/jpbernst/Code/Overture/serial/A++P++-0.8.0/A++/install/include
> -DBL_USE_DOUBLE -DBL_Solaris -g -c ogenDriver.C
> "/home/jpbernst/Code/Overture/serial/A++P++-0.8.0/A++/install/include/A++_notemplates.h",
> line 1339.21: 1540-1091 (W) The friend declaration "APP_view" specifies a
> default argument expression and is not a definition.
> . . .
> "/home/jpbernst/Code/Overture/serial/Overture.v24/bin/../include/nullgl.h",
> line 849.44: 1540-1101 (W) A return value of type "unsigned char" is expected.
> "/home/jpbernst/Code/Overture/serial/Overture.v24/bin/../include/nullgl.h",
> line 860.42: 1540-1101 (W) A return value of type "int" is expected.
> "/home/jpbernst/Code/Overture/serial/Overture.v24/bin/../include/nullgl.h",
> line 861.34: 1540-1101 (W) A return value of type "unsigned int" is expected.
> "/home/jpbernst/Code/Overture/serial/Overture.v24/bin/../include/nullgl.h",
> line 862.51: 1540-1101 (W) A return value of type "const unsigned char *" is
> expected.
> . . .
> xlC -qpic -qmaxmem=-1
> -I/home/jpbernst/Code/Overture/serial/Overture.v24/bin/../include
> -I/home/jpbernst/Code/Overture/serial/A++P++-0.8.0/A++/install/include
> -I/home/jpbernst/Code/Overture/serial/A++P++-0.8.0/A++/install/include
> -DBL_USE_DOUBLE -DBL_Solaris -g -c ogenFunction.C
> "/home/jpbernst/Code/Overture/serial/A++P++-0.8.0/A++/install/include/A++_notemplates.h",
> line 1339.21: 1540-1091 (W) The friend declaration "APP_view" specifies a
> default argument expression and is not a definition.
> . . .
> "/home/jpbernst/Code/Overture/serial/Overture.v24/bin/../include/nullgl.h",
> line 860.42: 1540-1101 (W) A return value of type "int" is expected.
> . . .
> xlC -qpic -qmaxmem=-1
> -I/home/jpbernst/Code/Overture/serial/Overture.v24/bin/../include
> -I/home/jpbernst/Code/Overture/serial/A++P++-0.8.0/A++/install/include
> -I/home/jpbernst/Code/Overture/serial/A++P++-0.8.0/A++/install/include
> -DBL_USE_DOUBLE -DBL_Solaris -g -o ogen ogenDriver.o ogenFunction.o
> -Wl,-rpath,/home/jpbernst/Code/Overture/serial/Overture.v24/bin/../lib
> -L/home/jpbernst/Code/Overture/serial/Overture.v24/bin/../lib -lOverture
> -lOverture_static -Wl,-rpath,/home/jpbernst/Code/hdf5-1.8.0/hdf5/lib
> -L/home/jpbernst/Code/hdf5-1.8.0/hdf5/lib -lhdf5
> -Wl,-rpath,/soft/apps/zlib-1.2.3/lib -L/soft/apps/zlib-1.2.3/lib -lz
> -Wl,-rpath,/home/jpbernst/Code/Overture/serial/A++P++-0.8.0/A++/install/lib
> -L/home/jpbernst/Code/Overture/serial/A++P++-0.8.0/A++/install/lib -lApp
> -lApp_static -Wl,-rpath,/soft/apps/ibmcmp/xlf/bg/11.1/bglib
> -L/soft/apps/ibmcmp/xlf/bg/11.1/bglib -lxlopt -lxl -lxlf90 -lxlfmath
> /home/jpbernst/Code/Overture/serial/Overture.v24/bin/../lib/libOverture.a(second3.o):
> In function `_start':
> /gpfs/home/jpbernst/Code/Overture/serial/Overture.v24/mapUtil/second3.c:21:
> multiple definition of `_start'
> /usr/lib/gcc/powerpc64-suse-linux/4.1.2/../../../../lib/crt1.o:init.c:(.text+0x0):
> first defined here
> /usr/bin/ld: Warning: size of symbol `_start' changed from 36 in
> /usr/lib/gcc/powerpc64-suse-linux/4.1.2/../../../../lib/crt1.o to 32 in
> /home/jpbernst/Code/Overture/serial/Overture.v24/bin/../lib/libOverture.a(second3.o)
> /soft/apps/zlib-1.2.3/lib/libz.a(compress.o): In function `compress':
> compress.c:(.text+0xe0): multiple definition of `compress'
> /home/jpbernst/Code/Overture/serial/Overture.v24/bin/../lib/libOverture.a(TriangleSource.o):TriangleSource.c:(.text+0x264e0):
> first defined here
> /usr/bin/ld: Warning: size of symbol `compress' changed from 372 in
> /home/jpbernst/Code/Overture/serial/Overture.v24/bin/../lib/libOverture.a(TriangleSource.o)
> to 36 in /soft/apps/zlib-1.2.3/lib/libz.a(compress.o)
> /usr/lib/gcc/powerpc64-suse-linux/4.1.2/../../../../lib/crt1.o: In function
> `_start':
> init.c:(.text+0x20): relocation truncated to fit: R_PPC_REL24 against symbol
> `__libc_start_main@@GLIBC_2.0' defined in .plt section in
> /usr/lib/gcc/powerpc64-suse-linux/4.1.2/../../../../lib/crt1.o
> /usr/lib/gcc/powerpc64-suse-linux/4.1.2/crtbegin.o:(.fini+0x0): relocation
> truncated to fit: R_PPC_REL24 against `.text'
> /usr/lib/gcc/powerpc64-suse-linux/4.1.2/crtend.o:(.init+0x0): relocation
> truncated to fit: R_PPC_REL24 against `.text'
> ogenDriver.o: In function `__sinit65535()':
> ogenDriver.C:(.text+0x14): relocation truncated to fit: R_PPC_LOCAL24PC
> against symbol `_GLOBAL_OFFSET_TABLE_' defined in .got section in
> /usr/lib/gcc/powerpc64-suse-linux/4.1.2/../../../../lib/crt1.o+fffffffffffffffc
> ogenDriver.o: In function `__sinit65535()':
> /usr/include/c++/4.1.2/iostream:76: relocation truncated to fit:
> R_PPC_PLTREL24 against symbol `std::ios_base::Init::Init()@@GLIBCXX_3.4'
> defined in .plt section in
> /usr/lib/gcc/powerpc64-suse-linux/4.1.2/../../../../lib/crt1.o
> /usr/include/c++/4.1.2/iostream:76: relocation truncated to fit:
> R_PPC_PLTREL24 against symbol `__cxa_atexit@@GLIBC_2.1.3' defined in .plt
> section in /usr/lib/gcc/powerpc64-suse-linux/4.1.2/../../../../lib/crt1.o
> ogenDriver.o: In function `aString::__dftbdt(std::string*)':
> /home/jpbernst/Code/Overture/serial/Overture.v24/bin/../include/aString.H:214:
> relocation truncated to fit: R_PPC_LOCAL24PC against symbol
> `_GLOBAL_OFFSET_TABLE_' defined in .got section in
> /usr/lib/gcc/powerpc64-suse-linux/4.1.2/../../../../lib/crt1.o+fffffffffffffffc
> /home/jpbernst/Code/Overture/serial/Overture.v24/bin/../include/aString.H:214:
> relocation truncated to fit: R_PPC_PLTREL24 against symbol
> `std::basic_string<char, std::char_traits<char>, std::allocator<char>
> >::~basic_string()@@GLIBCXX_3.4' defined in .plt section in
> /usr/lib/gcc/powerpc64-suse-linux/4.1.2/../../../../lib/crt1.o
> ogenDriver.o: In function `aString::operator char const*() const':
> /home/jpbernst/Code/Overture/serial/Overture.v24/bin/../include/aString.H:214:
> relocation truncated to fit: R_PPC_LOCAL24PC against symbol
> `_GLOBAL_OFFSET_TABLE_' defined in .got section in
> /usr/lib/gcc/powerpc64-suse-linux/4.1.2/../../../../lib/crt1.o+fffffffffffffffc
> /home/jpbernst/Code/Overture/serial/Overture.v24/bin/../include/aString.H:214:
> relocation truncated to fit: R_PPC_PLTREL24 against symbol
> `std::string::c_str() const@@GLIBCXX_3.4' defined in .plt section in
> /usr/lib/gcc/powerpc64-suse-linux/4.1.2/../../../../lib/crt1.o
> ogenDriver.o: In function `MappingInformation::MappingInformation()':
> /home/jpbernst/Code/Overture/serial/Overture.v24/bin/../include/MappingInformation.h:27:
> additional relocation overflows omitted from the output
> /home/jpbernst/Code/Overture/serial/Overture.v24/bin/../lib/libOverture.a(generateMatrix.o):
> In function `Oges::generateMatrix(int&)':
> generateMatrix.C:(.text+0x1188): undefined reference to `ds2y'
> generateMatrix.C:(.text+0x1410): undefined reference to `qs2i1d'
> /home/jpbernst/Code/Overture/serial/Overture.v24/bin/../lib/libOverture_static.a(OvertureInit.o):
> In function `Overture::getGraphicsInterface(aString const&, bool, int,
> char**)':
> /gpfs/home/jpbernst/Code/Overture/serial/Overture.v24/static/OvertureInit.C:554:
> undefined reference to `GL_GraphicsInterface::GL_GraphicsInterface(bool,
> aString const&)'
> /gpfs/home/jpbernst/Code/Overture/serial/Overture.v24/static/OvertureInit.C:556:
> undefined reference to `GL_GraphicsInterface::GL_GraphicsInterface(int&,
> char**, aString const&)'
> /home/jpbernst/Code/Overture/serial/Overture.v24/bin/../lib/libOverture_static.a(OvertureInit.o):
> In function `Overture::nullFloatGridCollectionFunction()':
> /gpfs/home/jpbernst/Code/Overture/serial/Overture.v24/static/OvertureInit.C:491:
> undefined reference to
> `floatGridCollectionFunction::floatGridCollectionFunction()'
> /home/jpbernst/Code/Overture/serial/Overture.v24/bin/../lib/libOverture_static.a(OvertureInit.o):
> In function `Overture::nullFloatMappedGridFunction()':
> /gpfs/home/jpbernst/Code/Overture/serial/Overture.v24/static/OvertureInit.C:466:
> undefined reference to `floatMappedGridFunction::floatMappedGridFunction()'
> /home/jpbernst/Code/Overture/serial/Overture.v24/bin/../lib/libOverture_static.a(OvertureInit.o):
> In function `Overture::start(int&, char**&)':
> /gpfs/home/jpbernst/Code/Overture/serial/Overture.v24/static/OvertureInit.C:199:
> undefined reference to `floatMappedGridFunction::floatMappedGridFunction()'
> /gpfs/home/jpbernst/Code/Overture/serial/Overture.v24/static/OvertureInit.C:203:
> undefined reference to
> `floatGridCollectionFunction::floatGridCollectionFunction()'
> /soft/apps/ibmcmp/xlf/bg/11.1/bglib/libxlf90.so: undefined reference to
> `omp_get_thread_num'
> make[1]: *** [ogen] Error 1
> make[1]: Leaving directory
> `/gpfs/home/jpbernst/Code/Overture/serial/Overture.v24/bin'
> make: *** [all] Error 2
>
> While I am continuing to investigate these, I would greatly appreciate any
> input.
>
> In addition, the parallel Overturev24 build fails with many of the same
> problems plus, e.g.:
>
> /home/jpbernst/Code/Overture/Overture.v24/bin/../include/aString.H:214:
> additional relocation overflows omitted from the output
> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture.a(GridCollection.o):
> In function `List<Box>::append(Box const&)':
> /home/jpbernst/Code/Overture/Overture.v24/include/BL_List.H:558: undefined
> reference to `List<Box>::addAfter(ListLink<Box>*, Box const&)'
> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture.a(GridCollection.o):
> In function `List<Box>::~List()':
> /home/jpbernst/Code/Overture/Overture.v24/include/BL_List.H:542: undefined
> reference to `List<Box>::clear()'
> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture.a(GridCollection.o):
> In function `BoxList::clear()':
> /home/jpbernst/Code/Overture/Overture.v24/include/BoxList.H:404: undefined
> reference to `List<Box>::clear()'
> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture.a(ParentChildSiblingInfo.o):
> In function `List<Box>::append(Box const&)':
> /home/jpbernst/Code/Overture/Overture.v24/include/BL_List.H:558: undefined
> reference to `List<Box>::addAfter(ListLink<Box>*, Box const&)'
> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture.a(ParentChildSiblingInfo.o):
> In function `List<Box>::~List()':
> /home/jpbernst/Code/Overture/Overture.v24/include/BL_List.H:542: undefined
> reference to `List<Box>::clear()'
> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture.a(ParentChildSiblingInfo.o):
> In function `BoxList::join(BoxList const&)':
> /home/jpbernst/Code/Overture/Overture.v24/include/BoxList.H:397: undefined
> reference to `List<Box>::join(List<Box> const&)'
> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture.a(ParentChildSiblingInfo.o):
> In function `BoxList::clear()':
> /home/jpbernst/Code/Overture/Overture.v24/include/BoxList.H:404: undefined
> reference to `List<Box>::clear()'
> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture.a(ParentChildSiblingInfo.o):
> In function `BoxList::length() const':
> /home/jpbernst/Code/Overture/Overture.v24/include/BoxList.H:420: undefined
> reference to `List<Box>::length() const'
> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture.a(InterpolateRefinements.o):
> In function `List<Box>::~List()':
> /home/jpbernst/Code/Overture/Overture.v24/include/BL_List.H:542: undefined
> reference to `List<Box>::clear()'
> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture.a(Regrid.o):
> In function `Regrid::splitBox(Box&, intSerialArray const&, BoxList&, int)':
> Regrid.C:(.text+0x4a48): undefined reference to
> `List<Box>::addAfter(ListLink<Box>*, Box const&)'
> Regrid.C:(.text+0x4b4c): undefined reference to
> `List<Box>::addAfter(ListLink<Box>*, Box const&)'
> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture.a(Regrid.o):
> In function `BoxList::~BoxList()':
> Regrid.C:(.text+0x4d64): undefined reference to `List<Box>::clear()'
> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture.a(Regrid.o):
> In function `Regrid::buildProperNestingDomains(GridCollection&, int, int,
> int, int)':
> Regrid.C:(.text+0x9c6c): undefined reference to
> `List<Box>::addAfter(ListLink<Box>*, Box const&)'
> Regrid.C:(.text+0x9e50): undefined reference to `List<Box>::clear()'
> Regrid.C:(.text+0x9e58): undefined reference to `List<Box>::clear()'
> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture.a(Regrid.o):
> In function `Regrid::buildGrids(GridCollection&, GridCollection&, int, int,
> int, BoxList*, intSerialArray**)':
> Regrid.C:(.text+0xcab0): undefined reference to `List<Box>::length() const'
> Regrid.C:(.text+0xcc38): undefined reference to `List<Box>::length() const'
> Regrid.C:(.text+0xf250): undefined reference to `List<Box>::length() const'
> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture.a(Regrid.o):
> In function `Regrid::regridAligned(GridCollection&, GridCollection&, bool,
> doubleGridCollectionFunction*, double, intGridCollectionFunction&, int, int)':
> Regrid.C:(.text+0x14ba8): undefined reference to `List<Box>::clear()'
> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture.a(Regrid.o):
> In function `List<Box>::~List()':
> Regrid.C:(.text+0x1ccb4): undefined reference to `List<Box>::clear()'
> . . .
> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture_static.a(BoxList.o):
> In function `List<Box>::append(Box const&)':
> /home/jpbernst/Code/Overture/Overture.v24/include/BL_List.H:558: undefined
> reference to `List<Box>::addAfter(ListLink<Box>*, Box const&)'
> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture_static.a(BoxList.o):
> In function `BoxList::length() const':
> /home/jpbernst/Code/Overture/Overture.v24/include/BoxList.H:420: undefined
> reference to `List<Box>::length() const'
> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture_static.a(BoxList.o):
> In function `BoxList::simplify()':
> /gpfs/home/jpbernst/Code/Overture/Overture.v24/boxlib/BoxList.C:341:
> undefined reference to `List<Box>::remove(ListIterator<Box>&)'
> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture_static.a(BoxList.o):
> In function `BoxList::clear()':
> /home/jpbernst/Code/Overture/Overture.v24/include/BoxList.H:404: undefined
> reference to `List<Box>::clear()'
> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture_static.a(BoxList.o):
> In function `List<Box>::~List()':
> /home/jpbernst/Code/Overture/Overture.v24/include/BL_List.H:542: undefined
> reference to `List<Box>::clear()'
> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture_static.a(BoxList.o):
> In function `BoxList::BoxList(BoxList const&)':
> /gpfs/home/jpbernst/Code/Overture/Overture.v24/boxlib/BoxList.C:43: undefined
> reference to `List<Box>::List(List<Box> const&)'
> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture_static.a(BoxList.o):
> In function `BoxList::complementIn(Box const&, BoxList const&)':
> /gpfs/home/jpbernst/Code/Overture/Overture.v24/boxlib/BoxList.C:176:
> undefined reference to `List<Box>::catenate(List<Box>&)'
> /gpfs/home/jpbernst/Code/Overture/Overture.v24/boxlib/BoxList.C:177:
> undefined reference to `List<Box>::remove(ListIterator<Box>&)'
> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture_static.a(BoxList.o):
> In function `complementIn(Box const&, BoxList const&)':
> /gpfs/home/jpbernst/Code/Overture/Overture.v24/boxlib/BoxList.C:153:
> undefined reference to `List<Box>::catenate(List<Box>&)'
> /gpfs/home/jpbernst/Code/Overture/Overture.v24/boxlib/BoxList.C:154:
> undefined reference to `List<Box>::remove(ListIterator<Box>&)'
> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture_static.a(BoxList.o):
> In function `BoxList::intersect(Box const&)':
> /gpfs/home/jpbernst/Code/Overture/Overture.v24/boxlib/BoxList.C:127:
> undefined reference to `List<Box>::remove(ListIterator<Box>&)'
> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture_static.a(BoxList.o):
> In function `BoxArray::operator[](int) const':
> /home/jpbernst/Code/Overture/Overture.v24/include/BoxArray.H:345: undefined
> reference to `Array<Box>::get(long) const'
> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture_static.a(BoxList.o):
> In function `BoxArray::length() const':
> /home/jpbernst/Code/Overture/Overture.v24/include/BoxArray.H:317: undefined
> reference to `Array<Box>::length() const'
> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture_static.a(BoxList.o):
> In function `BoxList::operator=(BoxList const&)':
> /gpfs/home/jpbernst/Code/Overture/Overture.v24/boxlib/BoxList.C:50: undefined
> reference to `List<Box>::operator=(List<Box> const&)'
> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture_static.a(BoxList.o):
> In function `BoxList::BoxList(BoxList const&)':
> /gpfs/home/jpbernst/Code/Overture/Overture.v24/boxlib/BoxList.C:43: undefined
> reference to `List<Box>::List(List<Box> const&)'
> /soft/apps/ibmcmp/xlf/bg/11.1/bglib/libxlf90.a(loadquery.o): In function
> `ResolveThreadNumFunc':
> /build/xlf/111/xlf.111.bga-prod-opt-bgp/xlf/rte2/src/io/shr/loadquery.c:(.text+0xe):
> undefined reference to `omp_get_thread_num'
> /build/xlf/111/xlf.111.bga-prod-opt-bgp/xlf/rte2/src/io/shr/loadquery.c:(.text+0x16):
> undefined reference to `omp_get_thread_num'
> make[1]: Leaving directory
> `/gpfs/home/jpbernst/Code/Overture/Overture.v24/bin'
>
> These Box problems do not appear in the serial build. Any thoughts?
>
> Best,
>
> Joe
>
>
> ----- Original Message -----
> From: "Erik Wilson"<wilsone@xxxxxx>
> To: overture@xxxxxxxxxxxxx
> Sent: Wednesday, May 9, 2012 9:00:54 PM
> Subject: [overture] Re: Building v24 on Blue Gene P
>
>
> That is correct, part of my patch adds an ifdef around overlay.c:
>
> --- Overture.v24/static/overlay.c 2011-05-18 11:21:54.000000000 -0400
> +++ overture/static/overlay.c 2011-07-31 12:16:52.000000000 -0400
> @@ -5,11 +5,16 @@
> and is provided without guarantee or warrantee expressed or
> implied. This program is -not- in the public domain. */
>
> +#include "OvertureDefine.h"
> +
> +#ifdef OV_USE_X11
> +
> #include<stdlib.h>
> #include<X11/Xlib.h>
> #include<X11/Xutil.h>
> #include<X11/Xmd.h>
>
> +
> /* Transparent type values */
> /* None 0 */
> #define TransparentPixel 1
> @@ -225,5 +230,7 @@ void detectOverlaySupport(Display *dpy,
> /* printf("**** info: overlay visual found *****\n"); */
> *overlayColormap = XCreateColormap(dpy,
> DefaultRootWindow(dpy),overlayVisual, AllocNone); /* wdh */
> }
> -
> }
> +
> +
> +#endif // OV_USE_X11
>
> Cheers,
> -Erik
>
>
> On 05/09/2012 04:30 PM, Bill Henshaw wrote:
>> Joe;
>> I guess that Eric's patches must have removed the compilation of
>> overlay.c which should not be compiled if there is no X11.
>>
>> ...Bill
>>
>> On 05/09/2012 04:07 PM, J. P. Bernstein wrote:
>>> Hello All,
>>>
>>> Now a funny failure has cropped up. Upon restarting the build in
>>> order to verify steps taken so far, I got this failure:
>>>
>>> mpixlc_r -w -qarch=450d -qtune=450 -qmaxmem=-1 -qpic
>>> -I/home/jpbernst/Code/Overture/Overture.v24-pmake/include
>>> -I/home/jpbernst/Code/Overture/A++P++-0.8.0/P++/install/include -g
>>> -DSHM -DUSE_PPP -I. -I/include -I/home/jpbernst/Code/Mesa-7.2/include
>>> -c overlay.c
>>> "overlay.c", line 9.10: 1506-296 (S) #include file<X11/Xlib.h> not
>>> found.
>>> "overlay.c", line 10.10: 1506-296 (S) #include file<X11/Xutil.h> not
>>> found.
>>> "overlay.c", line 11.10: 1506-296 (S) #include file<X11/Xmd.h> not
>>> found.
>>>
>>> I verified that it is now happening after creating a fresh Overture
>>> build directory from the tarball and trying a build with the
>>> following configuration command:
>>>
>>> ./configure bg noX11 parallel
>>>
>>> with only the following minimal modifications to the Overture source
>>> in order to enable a build on BG/P:
>>>
>>> 1) Removed "-fPIC -Wno-deprecated" from PFLAGS in
>>> GridFunction/Makefile.in (line 115).
>>>
>>> 2) Enclosed MPI info lookup code within "if( $machine ne "bg" ) {}".
>>>
>>> 3) Adding to configure:
>>>
>>> if( $machine eq "bg"&& $double ne "" )
>>> {
>>> $FortranDouble = "-qautodbl=dbl4";
>>> }
>>>
>>> I am at a loss as to why this started. Should this not be taken care
>>> of by the noX11 configure option? I was not getting this build error
>>> before. My MakeDefs file content is appended below.
>>>
>>> Best,
>>>
>>> Joe
>>>
>>>
>>
>
>
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