[mira_talk] Re: viewing sff flowgrams in gap4

On Friday 21 November 2008 16:56, Giuseppe D'Auria wrote:
> Hi All,
> I do not know if it the correct place to past this question.
> I installd Staden V4.11 On my Linux 64bit AMD machine.
>
> After the assembly of my sff files by standard procedure with manual
> parameters I obtained without problems caf and ace files, then I
> converted them in aux to open with my working gap4.
>
> Now I am not able to open the flowgrams. I setted the trace file
> location pointing to the sff file (SFF=filename.sff) in the trace file
> location field of gap4. I am able to open standard ABI file (ztr) added
> to the assembly but I am not able to view my original sff traces.
> No error message appears in my shell.
>
> Someone have some idea?

I never used the flowgrams myself during cleanup, so this feature was not 
followed through in the development. Nevertheless, I've now added the 
necessary info to the CAF files when they're written.

http://www.chevreux.org/tmp/mira_2.9.35x1_dev_linux-gnu_x86_64.tar.bz2

You will need to reassemble your projects though (I'm sorry for the 
inconvenience) or write a script that adds the name of the read as "SCF_File" 
entry to CAF files for every read that does not have one already.

Regards,
  Bastien

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