[mira_talk] Re: total bp's

Bastien Chevreux wrote:

On Thursday 03 February 2011 22:24:04 Veljo Kisand wrote:

thanks for your  suggestions but I mean all total base pairs in the all
reads which are taken account for the given assembly. In most cases, for
example with 454 reads and genome data should be really large number.  I
did not find it directly in any info files but maybe it is easy to
calculate from some such data?
Oh ... that. No, it's not specifically logged somewhere. But you can get it: in theoutput log, search for "Pool statistics" (careful, there may be more than one, showing the progress of clipping routines): 
Thanks, so correct one is after last Pass?

v.

--
You have received this mail because you are subscribed to the mira_talk mailing 
list. For information on how to subscribe or unsubscribe, please visit 
http://www.chevreux.org/mira_mailinglists.html

Other related posts: