Dear Mercedes,
It looks like your job ran out of memory. For most assemblies, Mira
needs dozens of gigabytes.
--Bob
On 04/10/2015 10:59 AM, Mercedes Bigi wrote:
Hi,
I tried to do a hybrid mapping assembly (454 and Solexa) but It resulted the next error:
"Loading reference backbone from NC_022350.gbk type gbf
Loading reads from B1_RL1.fastq type fastq
Localtime: Fri Apr 10 11:32:14 2015
Loading data from FASTQ file: B1_RL1.fastq
(sorry, no progress indicator for that, possible only with zlib >=1.34)
Done.
Loaded 217778 reads, Localtime: Fri Apr 10 11:32:18 2015
Looking at FASTQ type ... guessing FASTQ-33 (Sanger)
Running quality values adaptation ... done.
Loading reads from GXO-2_R2.fastq type fastq
Localtime: Fri Apr 10 11:32:18 2015
Loading data from FASTQ file: GXO-2_R2.fastq
(sorry, no progress indicator for that, possible only with zlib >=1.34)
src/central_freelist.cc:322] tcmalloc: allocation failed 16384
Killed
Failure, wrapped MIRA process aborted."
Can you help me?
Thanks
Mercedes
