[mira_talk] Re: specifying working directory without actually cd'ing into it?
- From: Juan Daniel Montenegro Cabrera <jdmontenegroc@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Mon, 27 Jun 2011 16:23:47 -0500
Ohhh, I forgot!!
If you change your project name you should add your own files for assembly
with
-LR:lsd=yes:ft="fasta" or "fastq" -FN:fai=YOUR_DATA.fasta (if it is fasta)
or :fqi=YOUR_DATA.fastq (if it is in fastq format)
Hope it is of any help at all,
Good luck
Juan Montenegro
2011/6/27 Evan <evan@xxxxxxxxxxx>
> Does anyone know if its possible to run mira from a different directory
> then where I want the <projectname>_assembly folder to be created?
>
> IE.
>
> if I'm in my home directory at ~ (aka /home/username/) and I want to start
> an assembly in ~/projects/assembly.abc/ I usually have to do cd
> ~/projects/assembly.abc/ then mira <lots of parms...>
>
> is there a way I can simply do mira <parms> ~/projects/assembly.abc/?
>
> Thanks,
> Evan
>
Other related posts:
