[mira_talk] Re: sffinfo information file with open source tools?
- From: Peter <peter@xxxxxxxxxxxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Wed, 9 Feb 2011 17:17:18 +0000
On Wed, Feb 9, 2011 at 4:49 PM, Robert Bruccoleri
<bruc@xxxxxxxxxxxxxxxxxxxxx> wrote:
> Dear James,
> I think Roche/454 will give you the programs if you ask.
True, but they are Linux only.
> The sffinfo program gives you the flowgrams and the analysis into sequences
> and quality score, so it's fairly complete.
An alternative if you can program in Python is to use Biopython's SFF
support (which was based on sff_extract without the paired end stuff).
http://biopython.org/DIST/docs/api/Bio.SeqIO.SffIO-module.html
What information in particular do you want?
Peter
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