[mira_talk] Re: sff_extract

Thanks Lionel,

While i'm on the topic I have also noticed *_mlc.part extensions as well.
Can you tell me what these ones are?

On Thu, May 21, 2009 at 6:05 PM, Lionel Guy <guy.lionel@xxxxxxxxx> wrote:

> Hi Brian,
>
> *_pl reads mean that there were several linker matches found in the read.
>
> By the way, there has been some issues with sff_extract, what version are
> you using? The latest one is (AFAIK) in
> http://www.chevreux.org/tmp/mira_3rdparty_05-05-2009.tar.bz2
>
> Cheers,
>
> Lionel
>
>
> On 21 May 2009, at 18:09 , Brian Forde wrote:
>
>  Hello all,
>>
>> I was having a look through the multi fasta file output of sffextract and
>> noticed some thing. All the reads have a file extension. *.fn (normal
>> nonpaired shotgun reads)
>> *.f/*.r (paired reads) and *_pl.part1. What I would like to know is what
>> are these reads the *_pl.part1?
>>
>> regards
>>
>> Brian
>>
>> --
>> "If scientists knew what they were doing they wouldn't call it research"
>>
>
>
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-- 
"If scientists knew what they were doing they wouldn't call it research"

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