[mira_talk] Re: sff_extract

Hi Brian,
*_pl reads mean that there were several linker matches found in the read.
By the way, there has been some issues with sff_extract, what version are you using? The latest one is (AFAIK) in http://www.chevreux.org/tmp/mira_3rdparty_05-05-2009.tar.bz2 

Cheers,

Lionel

On 21 May 2009, at 18:09 , Brian Forde wrote:


Hello all,
I was having a look through the multi fasta file output of sffextract and noticed some thing. All the reads have a file extension. *.fn (normal nonpaired shotgun reads) *.f/*.r (paired reads) and *_pl.part1. What I would like to know is what are these reads the *_pl.part1? 

regards

Brian

--
"If scientists knew what they were doing they wouldn't call it research" 


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