[mira_talk] problem with miraSearchESTSNPs
- From: Bastian Greshake <bgreshake@xxxxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Fri, 11 Jun 2010 10:27:11 +0200
Hi,
i'm having some trouble while trying to run the snp-detection step2.
I'll start the first step using:
miraSearchESTSNPs
--fastq
--project=snpassembly
--job=denovo,normal,sanger,esps1
--noclipping=sanger
This one works fine and it gives me corresponding output-files for step1. Then
i'm trying to run step2 to using:
miraSearchESTSNPs
--job=denovo,normal,sanger,esps2
This step stops stating:
> Fatal Error (may be due to problems of the input data):
> "You did not specify any input sequences to be loaded."
>
> ->Thrown: void Assembly::loadSequenceData_new()
>
> ->Caught: main
I can't see why this happens as it looks like i use the 2nd step like the
manual says. What could be the problem in here?
Cheers,
Bastian
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