[mira_talk] Re: problem with loading reads

  • From: Peter Menzel <ptr@xxxxxxxxxx>
  • To: mira_talk@xxxxxxxxxxxxx
  • Date: Thu, 6 Oct 2011 08:16:56 +0200

On 6 October 2011 00:12, Bastien Chevreux <bach@xxxxxxxxxxxx> wrote:
> Damn. Never tested Illumina 1.0 format in FSTQ, too old. My bad.
>
> Your only option at the moment: convert the FASTQ to standard FASTQ. I think
> one can use the FASTX toolkit for that, but I forgot how.
>

Ah ok, why does mira guess an offset of 59, which seems to be the
problem? I know there are 3 different Solexa formats, but either they
use ASCII offset of 33 or 64?

best, Peter

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