[mira_talk] number of nasty repeats option inconsistancy since release 2.9.43x1

Hi all,

i just wanted to point out that in release 43, this option was -SK:rt,
and at least since release 45, it is called -SK:nrr.

Problem is, when trying to assemble some eukaryote sequences,
i still get a reference to 'rt' naming in the log for versions 45 and 46:

        3) for organisms with complex repeats (eukaryots & some bacteria):
                - use -SK:mnr=yes
                - reduce the -SK:rt parameter by 2 and try again 
(iteratively, down to 4)

If i try -SK:mnr=yes:rt=8, i get an error because the option rt is unknown 
in version 46.

And if i try -SK:mnr=yes:nrr=8, it runs but stops at the same point saying 
i have Megahubs.

Basically, the proposed solution for organisms with complex repeats 
doesn't seem to work anymore since release 45 !

I tried with the same data with release 43, and evrything goes fine when 
using -SK:mnr=yes:rt=8

Thanks for your help
Cheers

Jorge.

--- 
Jorge Duarte
Bioinformatics Research Engineer
BIOGEMMA - Upstream Genomics Group
Z.I. Du Brézet
8, Rue des Frères Lumière
63028 CLERMONT FERRAND Cedex 2
FRANCE
Tel : +33 (0)4 73 39 60 73
Fax : +33 (0)4 73 39 60 71
E-mail : jorge.duarte@xxxxxxxxxxxx

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