[mira_talk] Re: not able to resume de novo RNA-seq assembly
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Sun, 15 Mar 2015 19:17:11 +0100
On 13 Mar 2015, at 11:20 , Juan Pascual Anaya <jpascualanaya@xxxxxxxxx> wrote:
> I was trying to de novo assemble a transcriptome of a vertebreate, with some
> 300M reads (including HiSeq and MiSeq), using MIRA 4.9.3.
Maybe MIRA is not the best tool for such large jobs.
> So, my problem is that due to allocation times in a cluster, MIRA is
> obviously stopped. So when I try to resume it, it just doesn't because it
> says it doesn't find the MAF files in the chkpt folder (which is actually
> empty).
> Mi first log (copied with a _1 suffix before resuming) and the log of the
> resuming are attached, as well as my manifest file. I saw in another thread
> that the first checkpoint is after loading and preprocessing... might it be
> that MIRA still didn't finished that when the job was killed?
That is indeed the problem, yes.
B.
--
You have received this mail because you are subscribed to the mira_talk mailing
list. For information on how to subscribe or unsubscribe, please visit
http://www.chevreux.org/mira_mailinglists.html
Other related posts:
