On Wed, Apr 9, 2014 at 12:22 PM, Laurent MANCHON <lmanchon@xxxxxxxxxxxxxx> wrote: > --Hi all and Bastien, > > is there perspectives to support new CRAM format ? > (http://www.1000genomes.org/faq/what-are-cram-files) > > Laurent -- MIRA v4 already produces (padded) SAM, which I now routinely convert into (unpadded) BAM. You can try turning this into CRAM - perhaps with a single piped command from 'samtools depad' into CRAM to avoid writing the intermediate BAM file to disk? Peter -- You have received this mail because you are subscribed to the mira_talk mailing list. For information on how to subscribe or unsubscribe, please visit http://www.chevreux.org/mira_mailinglists.html