I am using MIRA to assemble some Illumina fastq data. I have original two
files containing paired-end data that I did some quality control on using
prinseq. It generated 4 files, 2 paired end files (where both pairs were
kept) and 2 singleton files (where one of the reads in the read pair was
removed for quality issues).
I was wondering if there is a way of using MIRA to do an assembly using two
paired-end files in conjunction with the two single read data? I would
like to be able to take advantage of the fact that some of the data is
paired-end.
Ali
