[mira_talk] miraconvert problem
- From: lenis vasilis <val1@xxxxxxxxxx>
- To: <mira_talk@xxxxxxxxxxxxx>
- Date: Mon, 23 Mar 2015 16:13:07 +0000
Hello,
I'm trying to convert the maf output from Mira into sam with the miraconvert.
The conversion seems to went well, but when I tried to make the sam into bam I
have the following error:
SAM header is present: 1 sequences.
Line 21, sequence length 101 vs 102 from CIGAR
Parse error at line 21: CIGAR and sequence length are inconsistent
Aborted
With previous samples everything was ok. This is the first time that I'm facing
this error.
I'm really sorry for my ignorance, but I don't know how to fix it
The Mira version that I'm using is 4.0rc5.
I know that there is newer version but this is the only one that is being
installed in the cluster that I'm working.
Thank you very much in advance,
Vasilis.
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