[mira_talk] Re: miraconvert MAF into SAM - differing RG id ranges in SAM header and body
- From: "RIMBERT, Helene" <helene.rimbert@xxxxxxxxxxxx>
- To: "mira_talk@xxxxxxxxxxxxx" <mira_talk@xxxxxxxxxxxxx>
- Date: Fri, 4 Jul 2014 14:59:13 +0000
Hello Bastien,
Here is the cmd i run:
~/tools/mira_develop-0-g4a0ad04_linux-gnu_x86_64_static/bin/miraconvert -f maf
-t sam test_assembly/test_d_results/test_out.maf test &>maf2sam.log
and by the way, when running miraconvert -f maf -t fasta with the v4.0.2, i
have the same problem of number of strains >8 , and miraconvert stops.
When using the dev version you gave to me, the miraconvert -f maf -t fasta
works fine with my 10 samples:
miraconvert -f maf -t fasta -r C test_assembly/test_d_results/test_out.maf test
&>maf2fasta
Thank you very much for your help!
Hélène
-----Message d'origine-----
De : mira_talk-bounce@xxxxxxxxxxxxx [mailto:mira_talk-bounce@xxxxxxxxxxxxx] De
la part de Bastien Chevreux
Envoyé : jeudi 3 juillet 2014 21:25
À : mira_talk@xxxxxxxxxxxxx
Objet : [mira_talk] Re: miraconvert MAF into SAM - differing RG id ranges in
SAM header and body
On 03 Jul 2014, at 9:42 , RIMBERT, Helene <helene.rimbert@xxxxxxxxxxxx> wrote:
> I forgot to precise that the version of miraconvert I used here was from the
> dev. binary you gave me on june 26th.
> The miraconvert from v4.0.2 works fine!
Well, that helps. Can you give me the exact command line you are using so that
I can do own experiments?
B.
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