[mira_talk] Re: mira strain analysis caf files, and tracing the assemblies.
- From: Robin Kramer <kodream@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Fri, 25 Mar 2011 14:20:32 -0600
BTW, I am not sure this is related, but is there a good way to parametrize
the assembly "stringency" of the strain assemblies? Especially maybe in the
the third step. The step3 log file doesn't seem to have a default set of
parameters.
Sincerely yours,
Robin
On Fri, Mar 25, 2011 at 2:13 PM, Robin Kramer <kodream@xxxxxxxxx> wrote:
> I am not sure how to go about generating a "small sample" without tracing
> the reads back.
>
> Sincerely yours,
>
> Robin
>
>
>
> On Fri, Mar 25, 2011 at 11:20 AM, Bastien Chevreux <bach@xxxxxxxxxxxx>wrote:
>
>> On Thursday 24 March 2011 01:58:24 Robin Kramer wrote:
>>
>> > Also it seems that the read isn't showing up in the first or second
>> logs,
>>
>> > but only in the third.
>>
>> Strange. However, without data to have a look at and see exactly what
>> happens, I cannot help. If you have a small test case to send me, I'll be
>> happy to take a look at.
>>
>> B.
>>
>>
>
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