[mira_talk] Re: mira strain analysis caf files, and tracing the assemblies.
- From: Robin Kramer <kodream@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Wed, 23 Mar 2011 18:51:45 -0600
But why is it showing up in step3's output as a read, if I did grep all of
the directories and it doesn't show up in any of them?
Sincerely yours,
Robin
On Wed, Mar 23, 2011 at 6:38 PM, Bastien Chevreux <bach@xxxxxxxxxxxx> wrote:
> On Thursday 24 March 2011 01:33:32 Robin Kramer wrote:
>
> > That is what I thought, but I can't seem to find much assembly
> information
>
> > for this particular read in step2. It is in the step2_reads.caf file, but
>
> > there are no reads associated with it, to go back to step1. I was
>
> > expecting it to be in the step2_strainname directory, but it isn't in any
>
> > of the caf, fasta, or various info files either.
>
> "rgrep" is your friend :-)
>
> If that read is not in any of the "step2_*" directories (don't forget the
> 'default' "strainname"), it has been dropped after step1.
>
> B.
>
>
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