[mira_talk] Re: hybrid assembly question

On Mittwoch 08 Juli 2009 周琦 wrote:
> I produced 130Mb scaffolds from Solexa reads with SOAPdenovo, the longest
> scaffold is about 1Mb.  I used unaltered contigs/scaffolds without shreding
> them.  The organism genome size is about 200Mb.  Thank you.

Hi Qi,

hmmm, I wonder how you were able to load the large contigs with MIRA 
complaining about sequences being too long. The current limit for sequence 
length is 20k bases. I think I can quite easily bump it up to 32k, but this 
would be the absolute upper limit at the moment. For MIRA being able to do a 
Smith-Waterman on larger sequences I'd need to rewrite larger portions of the 
code.

Regards,
  Bastien


--
You have received this mail because you are subscribed to the mira_talk mailing 
list. For information on how to subscribe or unsubscribe, please visit 
http://www.chevreux.org/mira_mailinglists.html

Other related posts: