[mira_talk] Re: fastqselect.tcl output

  • From: vladimir mashanov <mashanovvlad@xxxxxxxxxxxxxx>
  • To: mira_talk@xxxxxxxxxxxxx
  • Date: Sat, 29 Oct 2011 22:10:09 -0400

Hi, Bastien

The command line was:
fastqselect.tcl -infile Illumina.fastq -name seqs.names -outfile seqs.fastq


The input file:
@HWUSI-EAS1676_0036_FC:6:1:10274:1044#0/1
CACAGACAAATTACTCAGCCTCATTATAAATTAAAGGC
+HWUSI-EAS1676_0036_FC:6:1:10274:1044#0/1
gggggggggfggfggggaggggggdeggfgg_fffffd
@HWUSI-EAS1676_0036_FC:6:1:2210:1056#0/1
TTTTTAAAAAAATCTTAAACCTTTTCTGAGGACTTCAGATTCATTAAGGTGATTAAC
+HWUSI-EAS1676_0036_FC:6:1:2210:1056#0/1
hhhhgcffhehg`hhghgghchggeec`ggadahhhcddfdhdfffddaW_aabbb^
@HWUSI-EAS1676_0036_FC:6:1:2331:1055#0/1
GAAGACAGTTAAGAAAATACTTGGTAAGAAGACTACTAGGAG
+HWUSI-EAS1676_0036_FC:6:1:2331:1055#0/1
_facefec]deffdfc\c``fcc[_`\`\\`cacbbdWaa]e
@HWUSI-EAS1676_0036_FC:6:1:2844:1049#0/1
TTACGCTTGTGGAGTATAACATCACTCGTGAACGTCTG
+HWUSI-EAS1676_0036_FC:6:1:2844:1049#0/1
eaddf_dfcbff]f]cX^Z^Y\Y``[bdbbbbce`a_d
@HWUSI-EAS1676_0036_FC:6:1:4007:1055#0/1
ATTTGCACCTTACTTATCTTAGTAGGTCTTAATTAA
+HWUSI-EAS1676_0036_FC:6:1:4007:1055#0/1
\cdaddfffff_fff_faccfdbadbb]ddaafffc
@HWUSI-EAS1676_0036_FC:6:1:6070:1048#0/1
ATCCAGAGCACAAAGTTTTGTCTCAAGTTCTGCTCT
+HWUSI-EAS1676_0036_FC:6:1:6070:1048#0/1
cccc_cZ\^aaccccc_aa^_cccccaccccccccc
@HWUSI-EAS1676_0036_FC:6:1:6804:1059#0/1
TACCTCCATTAAGACGAAACCTGTAGAGTGCCATAGGATGTTGTGTACTACACATCGGTTA
+HWUSI-EAS1676_0036_FC:6:1:6804:1059#0/1
ggfgggggggggfgdggggggggdggggcgaddbaagddgddgdcdc\_a_cddaca___a
@HWUSI-EAS1676_0036_FC:6:1:7860:1049#0/1
GCAAAAGGGAGGAGAGGGTAAGAGGCTGTGCCCGC
+HWUSI-EAS1676_0036_FC:6:1:7860:1049#0/1
_ffca]\_\T\XGZP`Z\[\U\YZX`b^b`[_P^^
@HWUSI-EAS1676_0036_FC:6:1:8218:1056#0/1
ATTTATTGAGCTTGCTTTAAAATTCCATCTTTAGTAACC
+HWUSI-EAS1676_0036_FC:6:1:8218:1056#0/1
afffffg`gdggggdggggfaggggffgfgggggegggg




On 29 October 2011 19:18, Bastien Chevreux <bach@xxxxxxxxxxxx> wrote:

> **
>
> On Saturday 29 October 2011 22:16:18 vladimir mashanov wrote:
>
> > Could you tell me please what I am doing wrong
>
>
> Not without seeing the data and the command line you used. Can you paste
> the first, say, 20 lines of your FASTQ file and the command-line you are
> using?
>
>
> B.
>
>
>


-- 
Vladimir Mashanov, PhD
Universidad de Puerto Rico
Faculdad de Ciencias Naturales
Departamento de Biologia
JGD Building, #220
PO Box 70377, UPR Station
Rio Piedras, PR 00936-8377
email: mashanovvlad@xxxxxxxxxxxxxx;
Skype: vladimirmashanov

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