[mira_talk] extremely high illumina coverage

  • From: Nestor Zaburannyi <nestor@xxxxxxxxxxxxx>
  • To: mira_talk@xxxxxxxxxxxxx
  • Date: Tue, 18 Oct 2011 22:06:46 +0200

Dear All,

Can  i instruct MIRA to trash a read that it is going to map next if
the  coverage  is  more than n-fold in this particular place? Can this
feature be implemented easily? The reason for this - i have a Bacteria
with  800x  coverage.  When  i take a reasonable subset (80x), it gets
assembled,  but not so good. I *suspect* that with such approach i can
close many gaps with this coverage. Can MIRA community coment on this?
Thanks!

Sincerely yours
Nestor


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