[mira_talk] Re: clipping in sff_extract

On Dienstag 19 Mai 2009 Schafleitner, Roland (CIP) wrote:
> I tried to extract sequence, quality and traceinfo files from sff files
> using sff_extract and at the same time clipping 6 bases from the left
> end using the -min_left_clip=6 command in sff_extract to correct for the
> wrong clipping performed by the sequence provider. MIRA however cannot
> load the resulting files, as the number of bases per read in the
> sequence and qual files seem not to be identical anymore.
>
> Has anybody an idea how to overcome this problem?

Looks like the same bug that was reported for sff_extract a few weeks ago. I'll 
have a look whether I can reproduce it and find the error.

Regards,
  Bastien


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