[mira_talk] Re: change stringency in Mira mapping assembly
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Mon, 28 Nov 2011 22:15:45 +0100
On Nov 28, 2011, at 21:32 , Christoph Hahn wrote:
> One more question concerning mirabait: Say you know that your data contains
> contaminations with host DNA in addition to the parasite data you are
> interested in, I suppose mirabait could be used also to find this
> contaminations in the illumina data set, right? One would just need a decent
> reference or "bait" dataset from the host organism.. Any potential problems
> with this approach?
No, I use this kind of approach for a couple of tasks. As long as the reference
is sufficiently close and there is no common sequence shared between host &
parasite, things work as expected.
B.
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