[mira_talk] Re: bug report for -CO:fnicpst

On Donnerstag 28 Mai 2009 Byron Knoll wrote:
> Thanks Bastien, that explains the results I observed. I am working with
> sequences with no quality values.

Which is normally a big "no-no!" in assembly :-)

But thinking of it: could you try whether setting the default quality of reads 
to 1 (-AS:bdq=1) leads to something that you'd be more comfortable with?

Because that should trigger -CO:fnicpst to go for a majority vote for every 
disagreement it finds.

Regards,
  Bastien

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