I assume by the log_assembly.txt you mean the output that normally goes to stdout? This will take a while to compress and will still be of significant size when it is done. Do you want me to place this file on a ftp server, or is there another way you would prefer to access it? Here is the output: -bash-3.2$ ls -lR .: total 128 drwxrwx---+ 2 artemus_harper dhingralab 32768 Sep 29 00:27 Chemdawg_mira_1_d_chkpt drwxrwx---+ 2 artemus_harper dhingralab 32768 Sep 29 07:46 Chemdawg_mira_1_d_info drwxrwx---+ 2 artemus_harper dhingralab 32768 Sep 28 08:21 Chemdawg_mira_1_d_results drwxrwx---+ 2 artemus_harper dhingralab 32768 Sep 29 09:05 Chemdawg_mira_1_d_tmp ./Chemdawg_mira_1_d_chkpt: total 55754528 -rw-rw----+ 1 artemus_harper dhingralab 2 Sep 29 00:27 passInfo.txt -rw-rw----+ 1 artemus_harper dhingralab 57092599549 Sep 29 00:27 readpool.maf ./Chemdawg_mira_1_d_info: total 19282560 -rw-rw----+ 1 artemus_harper dhingralab 235 Sep 28 08:21 Chemdawg_mira_1_info_callparameters.txt -rw-rw----+ 1 artemus_harper dhingralab 19745288382 Sep 29 07:58 Chemdawg_mira_1_info_readrepeats.lst ./Chemdawg_mira_1_d_results: total 0 ./Chemdawg_mira_1_d_tmp: total 96595552 -rw-rw----+ 1 artemus_harper dhingralab 0 Sep 28 08:46 Chemdawg_mira_1_info_reads_invalid -rw-rw----+ 1 artemus_harper dhingralab 112987644 Sep 29 00:27 Chemdawg_mira_1_info_reads_tooshort -rw-rw----+ 1 artemus_harper dhingralab 2532692091 Sep 28 23:59 Chemdawg_mira_1_int_clippings.0.txt -rw-rw----+ 1 artemus_harper dhingralab 28891431408 Sep 30 09:03 Chemdawg_mira_1_int_posmatchc_pass.1.bin -rw-rw----+ 1 artemus_harper dhingralab 34116844776 Sep 30 09:04 Chemdawg_mira_1_int_posmatchf_pass.1.bin -rw-rw----+ 1 artemus_harper dhingralab 0 Sep 29 07:58 Chemdawg_mira_1_int_posmatch_megahubs_pass.1.lst -rw-rw----+ 1 artemus_harper dhingralab 7836156888 Sep 28 10:24 Chemdawg_mira_1_log_readpoolinfo.lst -rw-rw----+ 1 artemus_harper dhingralab 7925161748 Sep 30 08:52 elog.skim.puh.count.Chemdawg_mira_1_int_posmatchc_pass.1.bin -rw-rw----+ 1 artemus_harper dhingralab 7924340056 Sep 30 07:47 elog.skim.puh.count.Chemdawg_mira_1_int_posmatchf_pass.1.bin -rw-rw----+ 1 artemus_harper dhingralab 9574107296 Sep 29 03:43 hashstat.bin -rw-rw----+ 1 artemus_harper dhingralab 0 Sep 29 00:27 miralog.noqualities On Wed, Oct 5, 2011 at 3:07 PM, Bastien Chevreux <bach@xxxxxxxxxxxx> wrote: > ** > > On Monday 03 October 2011 17:48:04 Artemus Harper wrote: > > > Mira stopped this morning. Please tell me if you need anything else from > > > the output file. It is taking up 167G of HD space right now. > > > Uh ... I don't like the error message. An old nemesis of mine. > > > Could you please send me > > - the MIRA output log (log_assembly.txt). Compressed, please. > > - the output of ls -lR of the "*_assembly" directory > > > Apart from that, I suppose you can delete the files. Sorry for that > failure. > > > B. > > > > -- Artemus Harper