[mira_talk] Re: Solexa paired-end reads
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Tue, 1 Mar 2011 20:54:15 +0100
On Sunday 27 February 2011 19:07:24 Peter wrote:
> [...]
> The details are not fresh to mind, but I think there is some headers
> that can be used in SAM/BAM to give library information like that
> (probably at the read group level). However, for each read pair
> there is a specific field for the insert/template size (one integer),
> which is what I was looking at for now.
Do not put too much work into that ... I just decided today to write a SAM
exporter. You'll have to thank James Bonfield for that decision ... his newest
version of gap5 has a CAF importer and a SAM exporter, which enables me to
have a complete loop to test my code.
Though James and I will have to tackle a few things still (tags come to mind).
B.
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