[mira_talk] SNP mining from ESTs using mira

Is there a way of mining SNPs from SNP databases? I have an EST database that should contain "intraorganismal" SNPs (as most genes are expressed from both chromosomes; the EST collection wash obtained from one animal). However, mira outputs "pristine" transcript contigs that have been sorted apart according to presence of SNP; I am looking for a way of putting them all together again to tag SNPs existing in ~50/50 ratio and then extract this info. 

Thank you in advance,
Pavel Sova
University of Washington
Seattle

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